SRR5846121.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR5846121.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	120093
Sequences flagged as poor quality	0
Sequence length	52
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTAGCGGTATCTCGTATGCCGTCT	700	0.5828816000932611	No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTAGCGGTATCTCGTATGC	649	0.5404145120864663	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTAGCGGTATCCTGTCTCTTATAC	158	0.13156470402105036	No Hit
TATTGAGGGACTTTTTGGCTATTACAAATAATGCTACTATGAATATTTGTGT	129	0.10741675201718667	No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACTTAGCGGT	128	0.10658406401705343	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCTGGC	20	6.0513866E-4	46.360237	14
GTCAATG	20	6.0513866E-4	46.360237	12
GCTATCG	20	6.319458E-4	45.954586	1
GCAATCG	20	6.319458E-4	45.954586	1
CACCGTG	20	6.319458E-4	45.954586	1
TTATGCG	25	3.418658E-5	45.954582	1
GTTCGCG	25	3.418658E-5	45.954582	1
AGTTGCG	35	1.01723344E-7	45.954582	1
ACCGGGA	55	1.8189894E-12	45.935448	4
TCCGGCT	20	6.3324545E-4	45.935444	44
CGGGTCT	30	1.8653645E-6	45.935444	6
AACAACC	20	6.3324545E-4	45.935444	42
GTACCGG	20	6.3324545E-4	45.935444	2
ACAAACG	20	6.3324545E-4	45.935444	24
GATAATA	20	6.3324545E-4	45.935444	9
CGAGTCC	20	6.3324545E-4	45.935444	40
ATGGCGT	20	6.3324545E-4	45.935444	37
TCATTCG	20	6.3324545E-4	45.935444	17
TGGACGT	20	6.3324545E-4	45.935444	26
ACCGCTT	20	6.3324545E-4	45.935444	39