FastQCFastQC Report
Sat 31 Dec 2022
SRR5846110.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846110.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43655
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTAGCGGTATCTCGTATGC5591.2804947886839997No Hit
CTTATACACATCTCCGAGCCCACGAGACTTAGCGGTATCTCGTATGCCGTCT5191.1888672546100103No Hit
TATATGGGGATCCTGGCTACAAGGTGAAGCAGCGCCTTGGCGGGGGCCGTGG4120.9437636009620892No Hit
ACTATAGGGAGGAGGAAGCACTTGGTATCTGGTATGTGATCGCTGTAGAGAA3460.7925781697400068No Hit
GCAGTTGGGGACCTCCGGCCTAGCCATGTGATTTCACTTCCACTCCATAACG3350.7673805978696598No Hit
CTCGCATCGGGATATTTAAGTACAGTTTTCATGAGGAAGTTTTAAAAGACCA2930.6711716870919712No Hit
TATAATGGGCAAGCAAAAACCAGGCTCCATCTACTCTTTGAAGCTTCTGCCC2860.6551368686290231No Hit
GGTCTTGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA2590.5932882831290803No Hit
GCTCCTGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTAA2450.5612186462031841No Hit
TCCTATGGGGTGGCAGTGAAGATGGATCCCTCCATGTCTTCGTGCTTGCTGT2340.536021074332837No Hit
GGTACTGGGGTTTTATGAAACCATCATAACTTGACCCAAACCCCAAGAAAGA2300.526858320925438No Hit
TATCTAGGGAACATTACTAATAAGTGGCTCCTTTAACCTCTCCACCCTTATC2270.5199862558698889No Hit
TCACTGGGTGAGGCTGATGCTACGCTCAGGCACACAGATTTTGGCACCAGCT2180.4993700607032413No Hit
GAAACCGGGACTGTGTGCCAAGCGCTTTTACGTGGCTTCTCCCTCAGCCAGC2160.4947886839995419No Hit
TCCTGTAGGGGGGTTAGATCGTCAGGTGAGGGAGGAAGGGATAGCCAGCGCG2130.48791661894399263No Hit
GCTTGCGGGAGGTGTTTGGTTATTGCTTTCAGAGTCAGACATTGTTTAGGTT2120.485625930592143No Hit
TTCACTGGGTCCCCAAGATTGAGGCTATTGAGACATGGCACTATCAACAGGT2100.48104455388844347No Hit
AATGTAGGGATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCC2040.4673004237773451No Hit
CAAAAGGGGCTTTCCAACTTGGACGCTGCAGAATGGCTCCCGCAAAGAAGGG2010.4604283587217959No Hit
TGCATGGGGACTCGAGAATGAAGAGAATGTTTTCTATAGGGAACTGCTAGAG1890.43294009849959914No Hit
AAACAAGGGAAGTTCAAGGATCCCATATAGTATAAGAATATAATTTCACTTG1870.4283587217958996No Hit
AAGCTTGGGAAGGCTAGGATTGAACTCCATATGCAGAGGGTTTCTATTCACA1800.41232390333295155No Hit
GAACCTGGGTGACAGAATAAGACCCTGTCTCAATAAATAAATAAAATTTCTA1710.39170770816630396No Hit
TAACGAGGGAGCCTCTTTGATGGATTTGCAGATGGGTTAGGAGTGGCTGAAG1660.38025426640705534No Hit
GCTAGCAGGCGACCAGGTGAACGGAGGCAAGGTGGTGAGGAAGCACTCAGGG1630.3733822013515061No Hit
TACTCCGGGATCCCTAGAACGTTGAGGGCACGAGTCGGGTCCTGAGACCAGG1610.36880082464780667No Hit
GCATGCGGGGCTCGGACCTAGGTCGCGGCGACATGGCCAAACGTACCAAGAA1570.35963807124040775No Hit
GTAACTACCCAGCCAGCAAGTATATAGCACAGAACACTGTGTTACTTTACAA1520.3481846294811591No Hit
CCTTCTGGGTATAACAAGTGTTGGAAGTTTGAGCATTGCAATTTCAACGACG1470.3367311877219104No Hit
AAACAAGGGGTCTTAAATTACTTTTGAATTTCTAATCTGTGAAGGCAGTAAA1450.33214981101821095No Hit
GCTTATGGGTGAACTGACAATTAACAGCCCAATATCTACAATCAACCAACAA1440.32985912266636125No Hit
GATTATGGGATCGGCGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCC1420.3252777459626618No Hit
TTGACCGGGATCGGCGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCC1400.3206963692589623No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACTTAGCGGT1390.3184056809071126No Hit
ATGGCAGGGAGGTAAAGTCTACTTTTATTTTGTCAAGCTTAATAATTTGTGT1390.3184056809071126No Hit
GCTAGCGGGCGAAATCTACAATGTAATATGAGTGCATTGTATGGGTTTGAAA1380.3161149925552629No Hit
CGTAATGGGAGACTTAAAGATTTGAGAAATTATTTGTGTCATTTACTAGACG1310.30008017409231474No Hit
TCCTAGGGGAGTGACATGCAGTTATATATTTTGTTTTTAAAAGGGGGGGAGC1300.297789485740465No Hit
GTTCTAGGGTCTGCCTTCTGAGTTGGCTCATCCTGGGCAGTCACAGACTGTC1260.28862673233306607No Hit
GTATGAGGGATGGTGGGGCAATGGTTATTTGGTTATTTTACTCAATTGGTTA1260.28862673233306607No Hit
TGGCATGGGGTGTTACTGGAAAAATTAAGTTGTTGAAAGTAAGTTGTTTTCC1230.2817546672775169No Hit
TGATACGGGGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAA1210.27717329057381745No Hit
ACATCGTGGGTAACACCCTTAATTCCATCCACCCTCCTCTCCCTAGGAGGCC1190.272591913870118No Hit
CTTTAGTAACACGGACAAGGCTCCTCGCCAAGGAACTCGTGGCAGAAGAGGG1090.24968503035162065No Hit
TCATTGGGTGTTGTGAAAAAGGAAGAGAATCATTAAAGAAAAAGAAAAAAGA1050.24052227694422174No Hit
ATATCTGGGTGCAGAAGAGTTTGTGGGTCTAGTGTTCAGTGAAAATGAAAAC1040.238231588592372No Hit
GCTGTAGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1030.2359409002405223No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACTTAGCGGTA990.22677814683312336No Hit
GACATAGGGCTTCATCCTTATTACCATGTCTGAGAACCCCTATTAACTGGTA960.21990608177757417No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTAGCGGTATCCTGTCTCT930.213034016722025No Hit
AAGCGCGGCAGCTATCTCAGATTTGAGCTATGTGAACTTTTAGTCAAGATGA890.20387126331462604No Hit
TAAGAAGGGGTGTTACTGGAAAAATTAAGTTGTTGAAAGTAAGTTGTTTTCC860.19699919825907686No Hit
ACGAAGGGTAGAAGAACAGACCTAACTAGCGAATGTATGAATGAAAATGCAT850.19470850990722713No Hit
GTGCGAGGGGCTACCCGTCCAGCCTGCCCAGACCCTCTCAGAGGAACGGGGT830.19012713320352767No Hit
GTTGGCGGGACTGAATGAATTTTGAAGCTTAATGTTTTTAAAGGCATAGTTT790.18096437979612875No Hit
GCCACTGGGGTCTATTGGTTATTGATCTTGCCATCTTTATTTAAAACCATGT780.178673691444279No Hit
CTAAGAGGGAACACATTTTGTATAATTGTATCGTATAGCTGTATTGAATCAT700.16034818462948114No Hit
AGTCTCAGGCTTCAACATCGAATACGCCGCAGGCCCCTTCGCCCTATTCTTC690.15805749627763144No Hit
CGTTGGGGACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCTA680.1557668079257817No Hit
CTTATACACATCTCCGAGCCCACGAGACTTAGCGGTATCCTGTCTCTTATAC670.15347611957393198No Hit
TAGCTGGGAGAAAAGAAGAGGGAACATTTATTTAAAGGATGGAAAGACTGGG660.15118543122208222No Hit
AGCCACGGTGCTATTCTGAGAGCCATTTTAAACTGCACTGCTCCAACCACCC640.1466040545183828No Hit
TTCGGCGGGCTTTACTCTTATGGTATTTAGTCAAAATACTGTTTTCCAAAGT630.14431336616653304No Hit
TCTACAGGGATTTAAAGCTATTTTATTTTTCTACGCCATCTGGCTAGTAGAT600.13744130111098385No Hit
CAAATGGGTTACCTCCAAATATGAAAATCTATAACAACCTATGGTTGAAGGA450.10308097583323789No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTTAGCGGTAT450.10308097583323789No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)