FastQCFastQC Report
Sat 31 Dec 2022
SRR5846100.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846100.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences181391
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGC10830.5970527754960279No Hit
CTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGCCGTCT9510.5242818000893099No Hit
CGTTAGGGGTCTTCGAGCGGGAGGCATGAAGGAGAGGCTGATGCAGGTAAAG4960.2734424530434255No Hit
ATTAAGGGAGAAATGACAGTGACTTAAACCAGTAGTCTGAGATGGAGAGAAA3380.1863378006626569No Hit
TAGAGATGGGCCTATGGAAACTAATCAGAAAAGCTAGAGCAGTTTTGAGAGG3250.17917096217563164No Hit
TCCGGTGGGGAATTGTGATAAACCATTATTTTCATCTATTAGTATTTATTCA2790.15381137983692686No Hit
GGCACTGGGGAATGACATGTGAGAAAACTCTTGTTAGACATGATGTTTCCTA2690.14829842715459973No Hit
GGTTCAGGGTATTTCCATTTTACAGATGAGGAAACTGAGGAATAGAGGGGTT2640.14554195081343618No Hit
ACGACTGGGGGGGCAGGTGGTAGGTGGAGGGCAGCGACGTTGTCCTCAGGTG2380.13120827383938563No Hit
GCAAAAGGGCTCACACTGGGAAAAAATATGAAATTACATATCTGACAAATGA2320.12790050222998936No Hit
TAAGCACGGGGTCTGTTACATAGTAAGCGCTCAACAAATGTTCTGTGAACTA2280.1256953211570585No Hit
GTTTTCGGGAGAGAATAAGAATTTTCAAACTTAGGGAACATTGCCTTACATA2150.11852848267003326No Hit
GAAGCTCGGGGATGTTTGGCTGGGCCATGCAATGGCGCGAATACCCTGATAG2150.11852848267003326No Hit
CTGAATGGGCAAGTATTGGCAAGGACACGGATAAATTGGAACCTTTGTGCAT2110.11632330159710239No Hit
GCTTCAGGGACTGATTTTGTATCTTACAATAATTTTCTCATTTGATTTTTGC2100.11577200632886969No Hit
TAAACTGGGAAATCACAAGCAGACACCTACATATGATATATGAAGGAAACTT2070.11411812052417153No Hit
TGGCCAGGGCAGGATGAGGGACGGCTTGAGCAAATTTTACCTTTCACATGGT2060.11356682525593884No Hit
ACCTTGGGGTCATATGCCTGTTGCCAATCACTTTTAGGGGAATGGGATATGC2040.11246423471947341No Hit
ATCCAAGGGGAGGTAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGG2040.11246423471947341No Hit
GTAATTGGGGGAGCTGGTCATCGACAGGTGAGGGCCTTGACCAAGCCTGGTC2040.11246423471947341No Hit
GACTTTGGGAAGGAGACTACTCAACAAAAAGATTCCACTTCTGAAAGTACCT2010.11081034891477527No Hit
AAAGACGGGGTTAGCAGAGGGGCTATATATACTTCAGTTACAGATTGAGGTA1970.10860516784184443No Hit
AAAGCCGGGACCTTTAAAAGAATCACAAAGATATAAAAATCCTTTACAAATA1960.10805387257361171No Hit
GCAAGCGGGTATTCTAATAAGAAAAGTTAAGGTGTACAACTCTCCTAACTGT1950.10750257730537899No Hit
GGAGCTGGGAGAGAAACGAGGCATGGGAAGAATGGGGTGGAAGGATGCCAGA1950.10750257730537899No Hit
GACAATCGGGGGCTCGGGGCCGGGGACGGCTGCTGGAGCGGCGCCCGCCGCG1940.10695128203714627No Hit
CAGCACGGGATATTATGATTTTTGACACCTGAGTTAATGATATTTGTGAATG1940.10695128203714627No Hit
ACAATAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1920.10584869150068085No Hit
GTAACAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1920.10584869150068085No Hit
CAGACTGGGATGACTACAACCTGGGTTCACATCCCAGCTCTATCATTTACAT1910.10529739623244815No Hit
ACTGCAGGGACCATGAACAGCTTTCTGTAGCAGAGATCACCAATGCTTGCTT1890.1041948056959827No Hit
GTGGGCGGGATTTTGGTGGAAATGGATAACGTGTGACAGTAAATTTGAACAT1870.10309221515951729No Hit
TATTTGGGGTCCGATCTTAAGGCGGGATTGCTGAAGAAAAAATATTTGTAAA1870.10309221515951729No Hit
CACAAGGGGGTGCAGTTGGCAAAAACAAGCCCTCAGCACAGGATGGTGATCA1870.10309221515951729No Hit
CATCATGGGGAGGCTGTACCCACCAGCATGGGGCACCTTTCGCCTGCTGGAA1870.10309221515951729No Hit
GTATGCGGGGCCAGCAGCTTGCCTTTGAGAAGAAATGCTGCTGGCTCTATTT1860.10254091989128457No Hit
TGCTGCGGGAGAGACAGTGTCTCACCATGTTGCCCAGGCTGGTCTTGAACTC1840.10143832935481914No Hit
CAGGGTGGGGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACCGAAC1820.10033573881835373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)