FastQCFastQC Report
Sat 31 Dec 2022
SRR5846088.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846088.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54168
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGCCGTCT3980.7347511445872101No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGC3710.6849062176931029No Hit
CAACATGGGATACCTGACTGTTTCTCACAAAATCTCAACGATGTAAGCAAAG1490.27507015211933245No Hit
GAAAAAGGGATGGAGGATAACATAAACCGATACATGTCAAACTGTTCAGAGA1070.1975335991729434No Hit
TCGTCTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1040.19199527396248708No Hit
TAAGCTGGGAGAAGCTTTCATTCCACAAACTATAGAACAGATGAGCAAGAGC990.18276473194505982No Hit
AGTCAAGGGATTTTATTACATGAGGTGGTGGCATTGTATATTGACAAAATAT970.17907251513808892No Hit
GTACTTGGGATCTCACTTTGCTTGTATGTATTTTTTCTTCTCTAAAATTTTT960.17722640673460346No Hit
CATACCGGGATGGATTTTGCTTCTTTCTAAAGTTTAGCTTACAAATGGCTAT920.16984197312066163No Hit
TCATCAGGGCAGCAATAAATATAGCCAGCATTCAAAAAACAAATTATTCCTA910.1679958647171762No Hit
CAAGTAGGGGATGGTCCCACTGACTTCCCAGCTAATTTGCTGCCTTTGATAG910.1679958647171762No Hit
TACCATGGGATCTAAGGTGATGGGTTGATTTGTGCAGCAAACCACCATGGCA890.16430364791020527No Hit
GCTTTGGGAATGTTCCGATATTTCTTCATCTTATGTTTTATGTTACAAAACA890.16430364791020527No Hit
AGATCGGGGCATCAGGCAGTACTGGTAGAGTGGTAATATAAGAGAGATTTAG880.16245753950671984No Hit
AAAGCAGGGAGTGCACAGAGAGCTGTCGTATCAGCCTTCAGAAGAGCATTTA870.1606114311032344No Hit
TAACGAGGGTATGAAAGAAGCTTTCAGTCCTTCGCTCCCCAAGGCTGAGGGA860.1587653226997489No Hit
TTGTCGGAGGGAGGAGTTCGAAACCAGCTTTGCCAACATGGTGAAACCCCAT850.1569192142962635No Hit
ATACTCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA850.1569192142962635No Hit
ACAACAGGGCTTGTCGAGGGATTAACAAAAATTCCCAAGGCAAAATTAATTT840.15507310589277803No Hit
ACCTGGGAACTTAAAGGGAAACTTTCACAATGTCCGGAGCCCTTGATGTCCT840.15507310589277803No Hit
TGCGCAGGGTTCTCAGGGATGAAATTCTTTTTCAAAGTTTTGAAGTTCCTTG830.15322699748929255No Hit
CTTGTTGGGATGTAGTAGATGCTTAAAGTGGAAAATAGTGTTATGATGACTT830.15322699748929255No Hit
ATGTAAGGGAAGAGGATGCTGGGGAATTGTGCTGCTTGTCCTGTTGGCTGGT810.14953478068232168No Hit
CTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGCCTGTC800.1476886722788362No Hit
GCGCACGGGATAATCACTTGTTCCTTAAGTAGGGACCCGTATGAATGGCTCC790.14584256387535074No Hit
CAGCTAGGGTATTCTGAAAAGACTGTGGAGGAAGAAAACCCTTTACCCTGTT770.14215034706837987No Hit
TACATTGGGGTGGGACAGGCTCTTCTTTCCCAAAATTAGGGAGCTCTTGACA770.14215034706837987No Hit
TGTACCGGGCTCCAAGATACTCTTCTGAGTTGTAGAATTTTAACATTAATAA770.14215034706837987No Hit
TTGGCCAGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA770.14215034706837987No Hit
TCTCTAGGGATGTATGTCTGGTTTTCATGTGGATAACATTTGGCAATCAAAT770.14215034706837987No Hit
CTTTATGGGATGGAGGTGAGGTATTAAATGGTCTTCTGCTTAAATGGAAAAA770.14215034706837987No Hit
TAGTAGGGGATATAGGCATCTTCCATTGACATTAATAAAACTTAGAAACAGT750.13845813026140896No Hit
GCTTGAGGGCATATAAAGCTGAATACAAATTGGTTTGGGGGGAGATCCTTTC750.13845813026140896No Hit
ACCTTGGGGAGAGGGTCACTTGTTTGTATTGCAATAAACACTGGGACCAGTT750.13845813026140896No Hit
GTTGTTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC740.1366120218579235No Hit
TTAATAGGGCCACCGATCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT740.1366120218579235No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGCAGACT740.1366120218579235No Hit
CCACAAGCGGGTCCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAG740.1366120218579235No Hit
AATGTGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC730.13476591345443803No Hit
GATGTTGGGGGGGATCCAAACAAAACCCGTCTATTGAGATTGGTCAATGCAT730.13476591345443803No Hit
CTAACCGGGTGGGGGCTGGGATTTCAACATATGAATTTTGTGGGACACAATT730.13476591345443803No Hit
CAGCTTGGGGAGCACTACTCACAGATCCACACCTGACCCTGTTGGGTCGAGT720.1329198050509526No Hit
GACTATGGGGCCGATCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT720.1329198050509526No Hit
ATCCCAGTCCTAGCTGCTGGCATCACTATACTACTAACAGACCGCAACCTCA720.1329198050509526No Hit
TAAACTGGGCCCCTGGGATTTCAACAGCCATCTAACTATTCATCCAATTATT720.1329198050509526No Hit
TTTCATGGGGCTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA720.1329198050509526No Hit
GGGCATGGGAAAACTGAATACTTACAGATACTCGTGATTGTGTGGTTGCCTC710.13107369664746715No Hit
GCGCGGGGACATTCTACTATTGAATTATGTACAACATTTTCATTTTTTATGC710.13107369664746715No Hit
CGTTAAGGGAAGGCATGTGCCACCATGCCTGGCTTATTTTTGCGTTTTTGGT700.12922758824398167No Hit
TGACCAGGGCAGCAGATCCCACCCCCATGGAGCCCAGCAAGCTAAGATCCCC700.12922758824398167No Hit
GCGCTAGGGCGATCTGTACCTGGGTAAGTTGAAAATACCATAAGTGAAAAGT690.12738147984049625No Hit
ACAGCTGGGATGTATTTTGATCTTCCTGAAAATTAACACCAGAGATCTTTTT690.12738147984049625No Hit
AATTCTGGGTGACTTATTTATTTTTGTATCCTGTACCTTAGCACTGTTCTTG690.12738147984049625No Hit
CAGTATGGGAGTTGCAGCTGATGCCTGAATGTATCCTAGCTGACAAATTATT690.12738147984049625No Hit
GACCTGGGGAAGCAGCGCCTGGCAAAGTGGCGGCGCTCAGAAGGCCTGCCCT690.12738147984049625No Hit
AATCTGGGGAGCTTACGAGGAAATATTTCAGTAAAAGCAGTTAAAAAAGAAG680.1255353714370108No Hit
TCGCATCGGGATCGTGTGAGCACACCATATATTTACAGTAGGAATAGACGTA680.1255353714370108No Hit
GCTCCGGGGCGTGATTGAATTACTAGGTAGTAAAATGTGCACTGGACTGAAA670.12368926303352533No Hit
TACATGGGGATGAAAGACTGCAGTGTTCCATTTACAGGCATTGGTTGGTGGT670.12368926303352533No Hit
ACAACAGGGATGTATTATGAAGGTACTGGTTTCATCCTACTTCTTAACCATG670.12368926303352533No Hit
CAGCACGGGGTTTTACGAAAAGTTGTCAATGTTATTTAAAAAAAGAAAAATC670.12368926303352533No Hit
TGCAAAGGGATTGTAATAAAGCTTTTACTACTATGAAGGAAGACCATGAATC660.12184315463003986No Hit
TTCATAGGGCTTCACTGTAAACTATTAAATTCACCTTGATTATTTTATTAAT660.12184315463003986No Hit
GCCACTGGGGAATAGAATGGGAGGGATGTTTAGTATATCCAGTATGATTGGT660.12184315463003986No Hit
GGCGACGGGATCGATATGTCTTCCTAAAACCATGCATGTGGCCAGGCATGGT650.11999704622655442No Hit
TATTGCCGGGGAAATCTTAAAAATAATTTAAGGTGATTGGTTAGATACCAGA650.11999704622655442No Hit
CATAGAGGGCTCTTTCATATTCATTTTCTTGCAAACTCTAAAAACCTTGACC650.11999704622655442No Hit
GAAGCAGGGACATGCACCTGCCTTAGAAGGTAGGATTTTCTTCCCAGGGACC640.11815093782306897No Hit
TACACTGGGGCTTTGTGACAATTTACCTTTTAAGTTACCAATGACACTTTTG640.11815093782306897No Hit
CAAATTGGGACCCTGATAGAACTTTCTGGCAAAGGTGTATACATTTGTCACA640.11815093782306897No Hit
TTGGTTGGGCTAAAGGGGAATCATGATTATAAGTCCTTCAGCCCTTGGACTC640.11815093782306897No Hit
ATCAAGGGGTACAGCCTGCCATCTCTTCTTATAAATAATGTTATATTGAAAC640.11815093782306897No Hit
TAGCGAGGGCCACCCTCTGAGACTCCATTGGTGTCACACAAGGTGTCTTCTT640.11815093782306897No Hit
GGTAATGGGTATTTACCCAAGAGCATTGAAAGCAGGGACTTGAATAGATATC640.11815093782306897No Hit
TTACCTGGGATCTGTCTGTTTATGTAAGGGAATGTTTGATCATTGTTTGTTT640.11815093782306897No Hit
CTGTCTGGGAGAGTGCCCACTGAGTCAGGCTATGGAGGAAACCCTGGGGATA640.11815093782306897No Hit
CATTTAGGGAAGCATGTTTAATTGAAGAAAGTATTAATATCTCTTTAGATAA630.1163048294195835No Hit
GCACCCGGGCTGAGACAGGGCACTTAATTCCATTTTACTGTACTGAATTAGT630.1163048294195835No Hit
TTGAGTGGGGCTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAGA630.1163048294195835No Hit
GCGCTGGGGCTACTTTGCAGCTCTTTGCTTTTGTTCTTTGCCACTTTCTTCT630.1163048294195835No Hit
GCTACTGGGGCTTCCGGGACGAGGGCGCGTGGGTGAGGAAGGTCAGGTCTAG630.1163048294195835No Hit
TTAGCAGGGAGCAGGAGTCCAGAGGGAAGTACAGTTAATTTTCATTAATACC630.1163048294195835No Hit
TAGTTGGGGAATAGACATGATGCTTTATAATGAAGAAGTTTGTAGCAGAAAC630.1163048294195835No Hit
TATGCAGGGAGTGTTGGGTGCTATGAGTAGGTATGGATCTCTGTTGATTGAC630.1163048294195835No Hit
GCACTCGGGTCCTTTCAAAAACAAAAGTTCACATGATTGCTTTAACAATATA630.1163048294195835No Hit
TAAAAGGGGGAAACATTCCATGTTTTAATCTGAGCCTTGCAGACTTTCATTT630.1163048294195835No Hit
GTCACAGGGAAAAGAGAGGTACTAACAACCTATGAAAAGACATGGAAGAAAC620.11445872101609807No Hit
TATAGTGGGAGGTTGCAAGGATAATAATTTTAGTAATTTATTTCCTACCGCC620.11445872101609807No Hit
CATACAGGGATTAGCAATTTTTTAAAAATACGTTCTAAAGATTCCAGTAGAT620.11445872101609807No Hit
CAAGAAGGGACAGAATGGGAGAAAATATTTCCAAGCCATGTATCTGATAAAT620.11445872101609807No Hit
TAGCGCGGGACAGCTGATGGTTCCAGCATCTTGGACAGAGCTGTTATTGAAC620.11445872101609807No Hit
AGAACAGGGTGGAGAGTACCTTGTTATATATACAGATACTTTCATGGTCATT620.11445872101609807No Hit
ATAACAGGGACTTTTTTATACAAACTATTTTCTTGAAAACTTAGTAGTTTTG620.11445872101609807No Hit
TGGTTTGGGAGATGTTAAGAGATTGAGGCCCTGGGCTGAGGGTATATAATGT620.11445872101609807No Hit
AGTGGTGGGGAAGCAAAGGAAGACATGAAAATTGACGCTCATTCTTCTTCCT620.11445872101609807No Hit
AAAGTTGGGAATAAGAAACAGTTTAACAGAAAAATGAAATTTAAGCACAAAA620.11445872101609807No Hit
AATACCGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC610.11261261261261261No Hit
AGCTGCGGGTATGAAGTAGCTTTTGTGTCATTCATGTCGATGACATGAAAGT610.11261261261261261No Hit
ACGAGTGGGAGAGAGGAAGAATAAATCCACAGCAAGTTAATTAGAAATACAG610.11261261261261261No Hit
CTGAGCGGGCGATCTGTGTCGGGAACTCTAGCTTTGACAAAGATGATAACCA610.11261261261261261No Hit
CAGTAAGGGCTCCCAGGCACTTGGATCCCCATTAGAGAGTTAGGATATAATC610.11261261261261261No Hit
GTAGAGGGGAAAGTACCTAATGCTGCACTTGGATGTTTCAACTAAGGAAATG610.11261261261261261No Hit
TATAAAGGGATCATAAAGAGCACTTTGATGTGCAGATTCTCTTTCCAAGGTG610.11261261261261261No Hit
TTACGGGATCATAGAACACTCTCCCCTATGTCTTACGACCCCACCAGCAGTG610.11261261261261261No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGGCAGACTA610.11261261261261261No Hit
TTAACCGGGTAGATGTGATTAATTATCCAGTTCCCTACACTGGGAAAGAAAT600.11076650420912715No Hit
AGTAGTGGGCGAGTAGCTGGGATTGCAGGCGTGCACCATCACACCTGGCTAA600.11076650420912715No Hit
TTCTCAGGGTACCTTTTCTGTTAACTATCACAAATTCCTAGAGAAACAAGAT600.11076650420912715No Hit
CTCATAGGGACGGTGAGACTATTTGGAATTTTTTAAGAATGGCATCTGGCCA600.11076650420912715No Hit
ACCACTGGGGACCTCAAACGGGTGGCGATTTGATGGGTACCCCCAGGCTGGG590.10892039580564171No Hit
AACATCGGGTTGTCTGATTTTGTCCGTTTCTTAAAATTATGATTAGTGAGTG590.10892039580564171No Hit
AATTGAGGGTCAGGGGATAACGGGCAAATGGTGAAACCCAGAAAGTTTTGTT590.10892039580564171No Hit
GCCTCGGGTGCCAAAATGCAAGAAACTCATGGAGAATTGTCTCCCAACAGTC590.10892039580564171No Hit
GCACCCTTAAAAGTGATTTTGTTGCCGCTGCATAGATTCTGTGTAACTTTTT590.10892039580564171No Hit
GTAAGTGGGATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGC580.10707428740215626No Hit
AATGAAGGGATAACAAAACTGCTCAAAGATATTACAAGAAAACTGCAGACCA580.10707428740215626No Hit
GTAGATGGGGGACTCCCATATTCACTGCAACATTACTCACAATAGCCAAGAT580.10707428740215626No Hit
AACGACGGGGATCTAATCGGGGGATGTGCAAGCACTGTTCTAAGCCCTAGGC580.10707428740215626No Hit
GAGCAGGGGCATCCTATGCTGTGTTCTTTGCAACCTACCTGACCCTGGCTTG570.10522817899867079No Hit
TTTGTTGGGGCTTATGTGGATTACATATTCAATAAATCAGTGGCTTCCTTAT570.10522817899867079No Hit
CAACATGGGGACGTGCCCGGAGCAGCTCCCTTCGCTGTGGAAGCGGCGGTGT570.10522817899867079No Hit
ATTGAGGGGACACAGATGAAGGAGTCAGAGCAAGAGCTTCATGAAGGAGCCA570.10522817899867079No Hit
AGAAAGGGAAAGAATTAATGTTAAAATGTTTATTATAGCATTATTTTTATGT570.10522817899867079No Hit
AAAATTGGGGCTTACATAGCCATCCAGAGATCCACAGCTACGTCACTGAATT570.10522817899867079No Hit
CTCCTGGGGTGCCAGTCAACAGAGGATGCCATGACAGTGCTCACGCCACTAA560.10338207059518535No Hit
ATAAAAGGGTGCACCACCACATCCAAAAATAATTTTTATTGCTAAAGTTATG560.10338207059518535No Hit
AGCCGGGGGTTGCACATTTGAGTAACTATTTTCTTTCTGTTTTCTTTTACTC560.10338207059518535No Hit
CTGACTGGGTGCCAGAAAAGAGAGATGGTCATGACATTGTATAGTGAATGAT560.10338207059518535No Hit
ATATGCGGGATTTCTCCTCATTTCTTCCTTATGTTTAAACACGCCCCCATCT560.10338207059518535No Hit
TTAGGTGGGGAATTAGCAACATTCTTAGCTCCTTAGTGGGAAATTAAGGGAA560.10338207059518535No Hit
GACTAAGGGCCCTCCTCTACCTCAAATTCTCATGGAGCCCCGTAGCCCCAGA560.10338207059518535No Hit
GCAAACGGGATAATACATTCACGACAAAGTGTGTGTCACAACAGTGGGAAAA550.1015359621916999No Hit
ACATTAGGGAACCGCCAACGGCTGTGGCGTTTAAACCCAAGCCGCAGCCGCT550.1015359621916999No Hit
GATATGGGGAGAAGTCTGCCCTTTCCAAGAACAAATATATTTATGTTTGCCC550.1015359621916999No Hit
AAGAAGGGATTCGTCCCCACCCACGTCCTGGTGATTGGTCCATTTTACAGAG550.1015359621916999No Hit
ATGCTAGCGGGATTTTAAAAAACGTATTTAACAGAAGAGAGCAAATAAAGAT550.1015359621916999No Hit
AATCGTGGGATTGACCTTGAGCAGAATCACTTAACTTTCATTTTCTGGTTGG550.1015359621916999No Hit
ATACCTGGGTACGAGGACCAGTGGCTGCAGCTGCTGCGGACGTATGTGGGCC550.1015359621916999No Hit
CTTCTAGGGGATTTATAGACACCACATCTGGGGGGCTTTCAGGTTACAGCCT550.1015359621916999No Hit
GCTACTGGGGCAGAGACTAAGCAGGCTATTCTCATCTCTTTGAGTTTCCTGA550.1015359621916999No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)