FastQCFastQC Report
Sat 31 Dec 2022
SRR5846083.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846083.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences204150
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGC12490.6118050453098213No Hit
CTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGCCGTCT11290.5530247367132011No Hit
TGCTCACGGGGAAATTATTCTTATGTCAGCGTTTATAATATTTGAACTGAAC2610.1278471711976488No Hit
TTGCTCGGGAGCTACAAAATTCCTCAGGGATTTCATTTTGCAGGCATGTCTC2600.12735733529267695No Hit
AAGCGAGGGGTACGAGGATACTCAAATGGTTGTATATAGATAATATCAATTA2500.12245897624295861No Hit
GAATCTGGGAGCTGCCCAAGTGTGTGGCCTTGCTGAGTTTGACGGCTGTGGA2350.11511143766838108No Hit
TATTCGGGGGTTTTGTCATTGTTGATATTTTTGTTGTTTGGTCATGACATAC2300.11266225814352193No Hit
GCGCTAGGGGTAGTGGTTTGCATTCTCAGTGTGTGGCCACCAAATCCCCGAG2250.11021307861866275No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)