FastQCFastQC Report
Sat 31 Dec 2022
SRR5846082.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846082.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences204642
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGC12780.6245052335297739No Hit
CTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGCCGTCT11110.5428993070826126No Hit
AAGCGAGGGGTACGAGGATACTCAAATGGTTGTATATAGATAATATCAATTA2870.14024491551098991No Hit
TGCTCACGGGGAAATTATTCTTATGTCAGCGTTTATAATATTTGAACTGAAC2610.12753980121382708No Hit
TTGCTCGGGAGCTACAAAATTCCTCAGGGATTTCATTTTGCAGGCATGTCTC2420.11825529461205422No Hit
GAATCTGGGAGCTGCCCAAGTGTGTGGCCTTGCTGAGTTTGACGGCTGTGGA2350.11483468691666422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)