FastQCFastQC Report
Sat 31 Dec 2022
SRR5846081.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846081.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences199796
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGC12420.621634066748083No Hit
CTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGCCGTCT11160.5585697411359587No Hit
TGCTCACGGGGAAATTATTCTTATGTCAGCGTTTATAATATTTGAACTGAAC2840.1421449878876454No Hit
AAGCGAGGGGTACGAGGATACTCAAATGGTTGTATATAGATAATATCAATTA2670.13363630903521592No Hit
GAATCTGGGAGCTGCCCAAGTGTGTGGCCTTGCTGAGTTTGACGGCTGTGGA2210.11061282508158321No Hit
TTGCTCGGGAGCTACAAAATTCCTCAGGGATTTCATTTTGCAGGCATGTCTC2080.10410618831207831No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)