FastQCFastQC Report
Sat 31 Dec 2022
SRR5846080.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846080.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences237097
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGCCGTCT12680.5348022117529956No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGC11750.49557775931369863No Hit
AATATAGGGGTTACAAACCTGCACGTTGTGCACATGTACCCTAAAACTTAAA3260.13749646769043894No Hit
ACATCAGGGATGATGTTAAATCTACAGCATCAAGAAACAAAACATAATGACT2910.1227345769874777No Hit
TTGCAGGGAAGAGAGGATTCTCCAGTCATGTGATTTGCTCATTAGTTAAGAG2900.1223128086816788No Hit
ACACTGGGATTTGGGGTTTACATTCATATTCTGGATGAGTTTACACAACTAT2730.11514274748309763No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)