FastQCFastQC Report
Sat 31 Dec 2022
SRR5846079.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846079.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences237066
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGCCGTCT12510.5277011465161601No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGC11670.4922679760066817No Hit
TTGCAGGGAAGAGAGGATTCTCCAGTCATGTGATTTGCTCATTAGTTAAGAG3210.13540533016122092No Hit
AATATAGGGGTTACAAACCTGCACGTTGTGCACATGTACCCTAAAACTTAAA3140.13245256595209773No Hit
ACACTGGGATTTGGGGTTTACATTCATATTCTGGATGAGTTTACACAACTAT2830.11937603874026644No Hit
ACATCAGGGATGATGTTAAATCTACAGCATCAAGAAACAAAACATAATGACT2670.11262686340512769No Hit
ACGATTGGGATGCTTAATATATGACCCAAAGAGGAGAGAAAGTATTGCTAGA2460.10376857077775808No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)