FastQCFastQC Report
Sat 31 Dec 2022
SRR5846078.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846078.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences233187
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGCCGTCT12240.5249006162436156No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGC11190.4798723771050702No Hit
ACATCAGGGATGATGTTAAATCTACAGCATCAAGAAACAAAACATAATGACT2960.1269367503334234No Hit
AATATAGGGGTTACAAACCTGCACGTTGTGCACATGTACCCTAAAACTTAAA2860.12264834660594287No Hit
TTGCAGGGAAGAGAGGATTCTCCAGTCATGTGATTTGCTCATTAGTTAAGAG2850.12221950623319482No Hit
ACACTGGGATTTGGGGTTTACATTCATATTCTGGATGAGTTTACACAACTAT2630.11278501803273769No Hit
CTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGCCTGTC2390.10249284908678442No Hit
GCGCAGGGGCTTCTGCTGAGGGGGCAGGCGGAGCTTGAGGAAACCGCAGATA2370.10163516834128832No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)