FastQCFastQC Report
Sat 31 Dec 2022
SRR5846063.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846063.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences228076
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGC12280.5384170188884407No Hit
CTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGCCGTCT10430.4573037057822831No Hit
CAAAGTGGAGATAAAATTGACTTTAAACCAACAACAGTAAAAAGGGGCAAAG3100.13591960574545328No Hit
ATAGCGGGGAAAATTATCCAGGTTATATAATTATTAGATGTTGGACTCAATC2940.12890440028762343No Hit
GAACATGGGGGTTAAGAATGTCAGTATACAAGAAGGAATAGAAAACTGATAC2890.1267121485820516No Hit
TTTGATGGGCATTGTAGACTGATTTTTAAGGATATTTATCACAAGAATAGTT2560.11224328732527755No Hit
GTATGCGGGCCAAAGAAAATAATCAGCACTCCGTATGCTACCTCAGATCCTG2520.11048948596082007No Hit
ATAGCTGGGATTACCGGGGCCTGCCACCACACTTTGCTAATTTTTGTATTTT2390.10478963152633332No Hit
GTCATCGGGAATGAGCATTGACCTCAACTTAAAGTCACCAGCCCGTCCTTTG2370.1039127308441046No Hit
AGGCTTGGGGAAAAAAATATTACCACCTCTCTTTGTAATTTACTTTACTTGT2370.1039127308441046No Hit
GCGATAGGGATGCCATACATGCTTATTACATATTTAATAGACTTTAGCTCAC2350.10303583016187587No Hit
CGTTCAGGGAAGGCTTCCCCCAACACTCGCAGTGGAACCCGCCGTTCTCCGC2330.10215892947964714No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)