FastQCFastQC Report
Sat 31 Dec 2022
SRR5846059.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846059.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences258185
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGC12970.5023529639599512No Hit
CTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGCCGTCT11230.43495942831690454No Hit
GATGCTGGGATTACAGGTGTTAGCCACCGCGCCTGACAGGATATCAAATTTC2950.11425915525688944No Hit
TTATTTGGGATCATCTGTCCCATCTTACACAGCAGGCCACAGAAACATCAAG2860.1107732827236284No Hit
CAGTTAGGGACTCTTTGTCATACATATTAAGGCACTAATTACACAATTTTAA2800.10844936770145437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)