FastQCFastQC Report
Sat 31 Dec 2022
SRR5846050.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846050.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences349776
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGC18100.5174740405287955No Hit
CTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGCCGTCT15650.44742921183843376No Hit
AGATGTGGGCAAGGTCTGATTTTTCACACACAAAAATTCGCAACCTCTGGCA4130.1180755683637528No Hit
ACGTCTGGGAGATAATTATATCATACCATTGAAGATAATTTTGGAACTAAAA4090.11693197932391017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)