FastQCFastQC Report
Sat 31 Dec 2022
SRR5846049.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846049.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences353340
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGC18350.5193298239655856No Hit
CTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGCCGTCT14680.4154638591724684No Hit
ACGTCTGGGAGATAATTATATCATACCATTGAAGATAATTTTGGAACTAAAA4690.13273334465387446No Hit
AGATGTGGGCAAGGTCTGATTTTTCACACACAAAAATTCGCAACCTCTGGCA4410.12480896586856852No Hit
ACACTGGGGTGGAATGAGCATTCTCTTGTTTTAATGTTGGTGTCAGAAAATA3720.10528103243335031No Hit
AGCACTGGGCGATCTCGTCACGGGGTACTCATGTAAGACACAGTCATCAAAC3620.10245089715288391No Hit
ACACCGGGTAGTAATAGGCAGTGGAGAAAATCACTATGGTGATATTTTTGAC3610.10216788362483727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)