FastQCFastQC Report
Sat 31 Dec 2022
SRR5846048.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846048.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences341706
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGC17540.5133067607826611No Hit
CTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGCCGTCT14100.41263542343418025No Hit
ACGTCTGGGAGATAATTATATCATACCATTGAAGATAATTTTGGAACTAAAA4570.1337407010705109No Hit
AGCACTGGGCGATCTCGTCACGGGGTACTCATGTAAGACACAGTCATCAAAC4170.12203473161138523No Hit
AGATGTGGGCAAGGTCTGATTTTTCACACACAAAAATTCGCAACCTCTGGCA3810.11149935909817212No Hit
ACACCGGGTAGTAATAGGCAGTGGAGAAAATCACTATGGTGATATTTTTGAC3670.10740226978747812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)