FastQCFastQC Report
Sat 31 Dec 2022
SRR5846041.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846041.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences120847
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGCCGTCT10130.8382500186185838No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGC9030.7472258310094583No Hit
GGACCTGGGAGACTCGTCCTAGAGCACAGGGACTCTTGCCAATGAAACAGAC1550.12826135526740423No Hit
TCATGCGGGCAGCAAAAGACATATTTGTCCTCAGGATGCTTATAAGGCTAAT1540.12743386265277581No Hit
TCAACTGGGAGATCAGACTCATGTGCAGAATCGTGCCTGGAGAGAGAGGTTT1420.11750395127723486No Hit
CTTGGCTTGGGGTTTGATGAGCTTGTCACATTCTAATCCCTCTCCCCATCCT1400.11584896604797802No Hit
TACTTTGGGGGGATGGAAGGAGGGTAGGGAAGTTATGAATTACTCCTTCCAG1400.11584896604797802No Hit
AGCTTAGGGCCATGAATACCCTTTCAATGAATATAATTTTTCTACATTATCT1380.11419398081872119No Hit
TTGCTTGGGCAATTGCAATGATTTAAAGAAATGTATTTACTATAGGATAGCA1370.11336648820409279No Hit
TGACAGTGGGGTCCCTAAGAATGCTATGGTAACTTTTGGTCAGTAGATGGAG1330.11005651774557912No Hit
CGCACTGGGGACAGAAACCAGAAACGCACTTTTGAGAAAAAGACATTTGTAA1320.10922902513095072No Hit
ATGATGGGGATACTGACAAATGAATATTATCTGAAAGTTGTTTTGTTTCCAT1320.10922902513095072No Hit
GGTAGCGGGATGGCAATGCTTAGCACAGTATCTCGGTCACACCAAATTTCTG1290.10674654728706547No Hit
ACACGTGGGGGATTCTAGTAAATGAATGCAAATTAGACCTTTTAAATCAAAA1280.10591905467243704No Hit
TCAGCTCGGGAACCAAGTTTATATTAAACCAAGAGGCCATTTCCAATATGAT1270.10509156205780862No Hit
ACTCAGGGGGACACAGAATATGATCTAGCTCAGAAAAGTTTTACAATCTGGG1260.10426406944318023No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGC1260.10426406944318023No Hit
CCGGGACCACAAAAGTGAAGCCTGAGGCTTCTGTTCAATTTCATAGACTCCT1240.1026090842139234No Hit
GCACTTGGGAACGCAGAAGGACTGCCTCACTGAGCAACCAAGAGTGTCAGTT1240.1026090842139234No Hit
CTGAGCGCGGGATTGATAGCATTTATTGTGATAAGTACATTGTTTCCACTTC1240.1026090842139234No Hit
TCTAAATGGGAGACGCCATGGCTGCATTGAATGATATACGGTATCAGAGACT1240.1026090842139234No Hit
ACTACTGGGCTTTGTACAAGCTTTACAGTGCAGCAGCAACCCACAGACATCT1240.1026090842139234No Hit
GCATGAGGGGTTCCTCATGGCAGGTACTGGGAGGGGAGATGCTCTGGGAAGG1230.10178159159929497No Hit
CGTTACGGGCCCTTGCTCAAGGAAAGGAACCATTTATGTTCTGGCCTTGATT1230.10178159159929497No Hit
GCGCTTGGGACAATGTGCATTATACATATATATTAAATATATCCACAAAGCA1220.10095409898466655No Hit
GCATAGGGGAGCAGAGTGTCTGCATCTCTTGGAGAGTTACACATTTCTTCAT1220.10095409898466655No Hit
AAATAGGGGGGGTTACTAAATTCTGCTCAGATAGCATTCACGGAATGCTCGT1210.10012660637003816No Hit
TTATCGGGGCTTCATGACTCATTTTTGTGATTTTACTTATGTAATATGTTAT1210.10012660637003816No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)