FastQCFastQC Report
Sat 31 Dec 2022
SRR5846039.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846039.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119575
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGCCGTCT10300.8613840685762073No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGC9330.7802634329918462No Hit
GTTATTGGGAGCCAACCCATTTTTCTCTTCCTGTGTTGTTCACAATAACAAA1420.11875392013380723No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGC1420.11875392013380723No Hit
TCATGCGGGCAGCAAAAGACATATTTGTCCTCAGGATGCTTATAAGGCTAAT1410.11791762492159732No Hit
ACACCTGGGTGGACAGATGGATGCATAGATAGATACTCTGTAATTACAAAGA1400.11708132970938742No Hit
CTTGGCTTGGGGTTTGATGAGCTTGTCACATTCTAATCCCTCTCCCCATCCT1380.1154087392849676No Hit
CCTTATGGGATGTGAATTTTACCTCAATTTAAAACAAAATGCCGATTGAACT1360.11373614886054778No Hit
ACCGTAGGGAAGCTCCAGCTTCTCAGAAAGAATTAAAGAACTTGCTGTTCAA1340.11206355843612795No Hit
CGCTATGGGATGCTTCATGTTCTTCCACCCATTTACCTAATAGTATGAAACA1330.11122726322391804No Hit
AAAGCGGGGCCAGTAGCACATCGAAAAGCTTATCCACCACAATCAAGTCGGC1320.11039096801170813No Hit
AATCTCGGGATGTGTTTCATTCTAGTAAGAAAACCTCAAAGGATATTGTAGG1290.1078820823750784No Hit
TTGCTTGGGCAATTGCAATGATTTAAAGAAATGTATTTACTATAGGATAGCA1280.1070457871628685No Hit
AAATAGGGGGGGTTACTAAATTCTGCTCAGATAGCATTCACGGAATGCTCGT1270.10620949195065858No Hit
AATTCGGGGGGTGGTCCATCCCATAAGATTATAATGGAGCTGAAAAGTTCGT1260.10537319673844868No Hit
TGCTATGGGCTAGTTCTTATAGAAATAACAAAGCAAATAAAAGTTCTTAACA1250.10453690152623876No Hit
GCATGAGGGGTTCCTCATGGCAGGTACTGGGAGGGGAGATGCTCTGGGAAGG1240.10370060631402886No Hit
ATCAGCGGGATTGTCTAAGACGTGTGCCTACCTGGCTGTTGCTGTGTCAACC1240.10370060631402886No Hit
GGACCTGGGAGACTCGTCCTAGAGCACAGGGACTCTTGCCAATGAAACAGAC1230.10286431110181896No Hit
TGTTATGGGATGTGGAAATATACCTACCTCTTCCGTTGGAAAGAACATTTAA1230.10286431110181896No Hit
ATGATGGGGATACTGACAAATGAATATTATCTGAAAGTTGTTTTGTTTCCAT1230.10286431110181896No Hit
AAATAAGGGCAGCATATAATTTTTAATATCTTTACTTCTATCATCCCAAATC1220.10202801588960903No Hit
GCCAAGGGTGGTCCCATTATATAAAAACAAATATTTTCTGCTGAGTATCATA1220.10202801588960903No Hit
GTGATAGGGGCAAACAAAAGACAGCCCCACACGGACCAGTGTGCAGAAGGCT1210.10119172067739911No Hit
TTGTACGGGAGCAAGGGAAATTAGTTTTTAAAATTACTTATTATTGTTTCAA1210.10119172067739911No Hit
GCACTGGGGTTCTCATAAAAGGTGCTATAAATTGAAACATTTATTACACAGA1210.10119172067739911No Hit
ACTACTGGGAACTATTTTCATAGTAATACAAAGGTATCATTTACCTTTTAAA1210.10119172067739911No Hit
ATCGTAGGGCTGCATGTTTGTGATTGACGGGACTGTTGGTATTGGCTAGAGG1200.1003554254651892No Hit
CCGGGACCACAAAAGTGAAGCCTGAGGCTTCTGTTCAATTTCATAGACTCCT1200.1003554254651892No Hit
TCAACTGGGAGATCAGACTCATGTGCAGAATCGTGCCTGGAGAGAGAGGTTT1200.1003554254651892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)