FastQCFastQC Report
Sat 31 Dec 2022
SRR5846032.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846032.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92720
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGC7100.765746333045729No Hit
CTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGCCGTCT6100.6578947368421052No Hit
CTCCTTGGGCAACAAATTTAAATATTCATTTACTATCTGCTAGATGACAAGT1550.1671699741156169No Hit
TGAAAAGGGGGTCAAGCTCTTGCTCATGTGCCCTCCGAGCATAGGCTACAGA1360.14667817083692838No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGC1210.13050043140638481No Hit
ATCATCGGGTCTAGCTGTGGGACTGCCATTTTGCTGTGTTATGGCCCAGCTC1180.1272648835202761No Hit
CATATGGGGTTCAATGACGCAGTTAAGTCATCACCCAAGGATTTATGAATTT1070.11540120793787749No Hit
TTGGACGGGGGGCCTCGGCCACTTCCTCCACCCTTTGGCCCTGGTATGCGTC1010.10893011216566006No Hit
TGCATAGGGATTGCAGAAACTGGCCTTCCATCTCTCTCAGACACCAAGCTGC1010.10893011216566006No Hit
TATCTAGGGGTGGCTGCGGCGGCTGGGGCCATATGATGGGTGATGAGGGTTC1010.10893011216566006No Hit
CAAAGGGGAATCTATGATGCTGATGGTGATGGAGATTTTGATGTGGATGATG1010.10893011216566006No Hit
AAATGTCGGGTAAATAATCATATTTCTTTTTGAGCCAGCAGTTCTGTATAAT1000.10785159620362382No Hit
TTCAAGGGTAGTTAAGAGTTTTGAGTTGAGTGTTTGTTTTCAAAATAAAGTT1000.10785159620362382No Hit
CTGCGCGGTACAGAGAAGAGGTGCAAAAATCAACTTGATGGTAGTGGGAAGA990.10677308024158758No Hit
CCTCCGAACGGGGGGCCGGACCTCTTGCTTCTTAAGTTATTTTTTAAAACAT990.10677308024158758No Hit
TCATATGGGAGATTAGTCCATTTGTAAATTGACATTCAATACAATATGTGGT980.10569456427955133No Hit
GGACACGGGGGAGTGGGGAACTTCAATGTGGCTTTTGGGATTGAAAATCACA970.10461604831751509No Hit
AATGGTGGGAAGCCGATGGAGATCAACCCCGAGATGCTGAACAAAGTGCTGT970.10461604831751509No Hit
ATGCATGGGCAGATTGATAAAGGAGAAAAAGTTCCATTCTATTTTGAGGACA970.10461604831751509No Hit
GCTTTTGGGGGCACAGAGCCGCGGCTTGCTTTCAGGACACGGGTCGCTGGCG970.10461604831751509No Hit
TGGGTGGGGGTAGCAGCCACATCAGAAAGCAGAAGAAAACAGTATTTCTGAA960.10353753235547887No Hit
CTGTATGGGTAAGGAATAAATTAGAAACAAATTAATAAGAACTAGAGCTTCC960.10353753235547887No Hit
TTATATGGGATGCTTAGAGCAACTGGATGTGCAGTTGACAGATTGCTCTTTT950.10245901639344263No Hit
TAGCCTGGGCTGTGCCAGGGATATTGAGATGCTCTGGGGGTGTATTGTATAC950.10245901639344263No Hit
GATTTAGGGGACGCTTTTCCGATCTTGTGTCGGGAGAAGAAAGGTGGTACCT950.10245901639344263No Hit
ACTATCGGGATTTTCCTATTTAATATTCTTTAATGGCACTGCAGACCAAATT950.10245901639344263No Hit
ATTGCCGGGCTGGTCATTTTGGGGCGCTTAGGGGTGGGTGCCGGGGGGCGCG950.10245901639344263No Hit
GGAATGGGGCAGGATGAAAGACAAGATACTAGCTCAGAAGGAGTATCAAATG950.10245901639344263No Hit
TATCGGGGGAACCTGAAGAAGAAATTAGCAATCATAAAATATTTTTTCAGTA940.10138050043140638No Hit
ACTGTTGGGGAAGGTTTCGGTTGAAGTTGAACTTTTTATATAGCGTATCCTG940.10138050043140638No Hit
GTAATGGGGGAGATGGTAAGCAGCTGTATGAATGCTGATTTTAAAACCAGGT940.10138050043140638No Hit
TATCGTGGGAATGATATTATGTATTTTGTAAGGTTGTCCGAATGTTTAAATT940.10138050043140638No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)