FastQCFastQC Report
Sat 31 Dec 2022
SRR5846030.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846030.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92220
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGC6590.714595532422468No Hit
CTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGCCGTCT5960.6462806332682716No Hit
CTCCTTGGGCAACAAATTTAAATATTCATTTACTATCTGCTAGATGACAAGT1510.16373888527434396No Hit
TGAAAAGGGGGTCAAGCTCTTGCTCATGTGCCCTCCGAGCATAGGCTACAGA1360.14747343309477337No Hit
CTGTATGGGTAAGGAATAAATTAGAAACAAATTAATAAGAACTAGAGCTTCC1110.1203643461288224No Hit
ATAGGTGGGACGCTCTTGGTGGGAATGTAAATTAGTGTAGCCATTACGACAA1100.11927998265018433No Hit
CATATGGGGTTCAATGACGCAGTTAAGTCATCACCCAAGGATTTATGAATTT1070.11602689221427022No Hit
GGACACGGGGGAGTGGGGAACTTCAATGTGGCTTTTGGGATTGAAAATCACA1060.11494252873563218No Hit
TCATATGGGAGATTAGTCCATTTGTAAATTGACATTCAATACAATATGTGGT1060.11494252873563218No Hit
CTGCGCGGTACAGAGAAGAGGTGCAAAAATCAACTTGATGGTAGTGGGAAGA1040.1127738017783561No Hit
ATTTTCGGGAATGAAAAGGTGTAATAGCCTGATGTACGACCTTCGCGTCATA1030.11168943829971806No Hit
TATAAGGGGGAATCCCACAGAAGCAGAGTTACAGGACATGATTAATGAAGTA1030.11168943829971806No Hit
CGTGCAGGGGACTGAAGCATTAAGTATATATAACTGTAAGTTTTTAGGTTCA1030.11168943829971806No Hit
TAAACTGGGGACTTAGCTTCACTGTTTGGAACTCAGAATACAGCTTCCTTTG1020.11060507482108003No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGC1020.11060507482108003No Hit
AAATGTCGGGTAAATAATCATATTTCTTTTTGAGCCAGCAGTTCTGTATAAT970.10518325742788982No Hit
TACTTGGGGGAAAAATTAACATGCATATTTAAGGGTGAATAAATCAGAAAAC950.10301453047061376No Hit
GACCAGGGATAGAGGGAGCTAGAACACTTAATGTTTAATCTGTTAAACCTGC940.10193016699197571No Hit
TCTTTTGGGCAGACTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTC930.10084580351333768No Hit
TGCATAGGGATTGCAGAAACTGGCCTTCCATCTCTCTCAGACACCAAGCTGC930.10084580351333768No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)