FastQCFastQC Report
Sat 31 Dec 2022
SRR5846029.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846029.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences154293
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGC5230.33896547477850586No Hit
CTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGCCGTCT5000.32405877129876276No Hit
CTAAAAGGGATGGCAGGGAGGGCTGCACTGACATTGATGCCTGGGGGACCTT1720.11147621732677437No Hit
ATTTATGGGTGGTGACAGATCTTCTCATGTGATGCTAGAGATGGGACTAGGG1660.10758751207118923No Hit
ATTGCGGGGATTTCTACTCAGGTACTCATTGTCCTGTTACTGATTCACCTTT1650.1069393945285917No Hit
GCGCTGGGGCATGCTGGCCGTCAAGAAGTAAAGGAAAGAAGAAGCCTTTCTG1590.10305068927300655No Hit
ACGTACGGGTACCTTTGTTAAATGAGTGTTTCCACCCATAAAAGATGTAGGT1570.10175445418781151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)