FastQCFastQC Report
Sat 31 Dec 2022
SRR5846028.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846028.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences153550
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGC5570.36274829045913387No Hit
CTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGCCGTCT4460.29045913383262784No Hit
ATAGCCGGGAAGTGGTCTCAAGTAGGACTATATATGCCTCATCCTGCTGGAG1710.11136437642461738No Hit
AACTACGGGCCCTCACCCTCCCCGAGATCGCCGCCAGCGGCCTCACGCGGAT1690.11006186909801369No Hit
GCGCTGGGGCATGCTGGCCGTCAAGAAGTAAAGGAAAGAAGAAGCCTTTCTG1570.1022468251383914No Hit
GTAGCTGGGGATCATGGAACATATTTAAAAATTATGATAGGTACCCAAACAT1550.10094431781178768No Hit
GCTCTTGGGATGCCTTCTATGTTAATTACTCTTTCTTGTATTTTACATCTTT1540.10029306414848582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)