FastQCFastQC Report
Sat 31 Dec 2022
SRR5846027.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846027.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences153762
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGCCGTCT5030.3271289395299229No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGC4940.3212757378285922No Hit
TGGGGTGCGTGGGATGTGGAAATAGCTCTGATGCAGGGTAAGTCAATAATTT1610.104707274879359No Hit
AGCACGGGAGGCACGGTAATTGCAGAAGGCTTTAGGAAGAGATAACACTAGA1600.10405691913476672No Hit
GTAGCTGGGGATCATGGAACATATTTAAAAATTATGATAGGTACCCAAACAT1550.10080514041180527No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)