FastQCFastQC Report
Sat 31 Dec 2022
SRR5846025.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846025.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences225081
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGC6490.28834064181339164No Hit
CTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGCCGTCT5230.23236079455840344No Hit
CGGTGTGGGTCTAACAGCCAGTTTTTCCTCCAAGGAGCACCAAGTGAAGTAG2390.10618399598366811No Hit
AGACTGGGTGGTTATGGATCAGGAGACAGTGAAGATGAGAGGAGTGACAGAG2290.10174115096343093No Hit
GAACTGGGGGACAGAGCAGCTGAGAAGAAATGGCTTTGGAAAGAATGGCTTC2270.10085258195938351No Hit
AATCAAGGGGTGCGCGCTTCGGCCGCGCTGCTGGACAAGCTGTATGCTCTCG2260.1004082974573598No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)