FastQCFastQC Report
Sat 31 Dec 2022
SRR5846024.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846024.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences222294
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGC6020.2708125275536002No Hit
CTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGCCGTCT5570.2505690661916201No Hit
TCAGCGTGGGGCCAGCGGGGCGGAGGACCGGCACGGCTACATCTGGGACCGC2250.1012173068099004No Hit
CTGTATGGGGACAAAGCAGACCTAATAGACATCTACAGAAATCTCCACCGCA2240.1007674521129675No Hit
TTTTAGGGGCATGTGTAGCACTTGTAAAAATGCAGATTCCTTCAACCTAACT2240.1007674521129675No Hit
CGGTGTGGGTCTAACAGCCAGTTTTTCCTCCAAGGAGCACCAAGTGAAGTAG2230.10031759741603462No Hit
AGACTGGGTGGTTATGGATCAGGAGACAGTGAAGATGAGAGGAGTGACAGAG2230.10031759741603462No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)