FastQCFastQC Report
Sat 31 Dec 2022
SRR5846008.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846008.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63124
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGCCGTCT6371.0091248970280717No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGC6280.9948672454217097No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGC1280.20277548951270516No Hit
GCACTGGGGCGCAGGACCACCGCGTGTGCTCCGGCTCCTGGGACAGCACAGT1190.18851783790634308No Hit
TTAACGGGGGAGTCAGAGAAATGCCATGGGGCAAAAAATAGAATAAAAGAAT1080.17109181927634498No Hit
GACCGGGATATCAAGAGTGTACATATCATCCAAAAGAGATGTTTATATCCAC1000.1584183511818009No Hit
TTGCCGTGGGACCACAGGCTGAAAGATTCCTCTTTAGGAAACCCGTAAGCTC980.1552499841581649No Hit
TTTGGTAGGGTGGGAGTTCTGGGGAGACTCCAAGAACTACCAGGAACAGGGA970.15366580064634686No Hit
ATTGGTGGGTTATGTCATGTTGGCATAAATTGTTTTGTAAAAGGGAAAGTGT970.15366580064634686No Hit
AGCGCAGGGTATTCAGTGTTGGAATGTTACAAGTGTTAGGTAAGGTTGCTAA970.15366580064634686No Hit
GTAACCGGGCTAGGAACGGGAGGGCTGTGGCTACCATGTTCTCTCGCGCGGG970.15366580064634686No Hit
GTGCCAGGGCTACAGGAAATGGATAACCATTTTAACTGTATTTTTTGCAGCC960.15208161713452886No Hit
TCAAAAGGGCTTTCAGGCTGGTTTTGGTTTGTATTAGATCTGTATAGTTTAA950.15049743362271084No Hit
GTTTGGGGAATACAACTTATGTGCCCATATTTCATCCTCTAGAAGCCTGCCA940.14891325011089285No Hit
GGCTTTGGGGGAGGCAGAGGTTGCAGTGAGCTGAGATCATGTCATTGCACTC920.14574488308725683No Hit
ATCATAGGGTAAAGCTTGCCACTAAAAATCAAAGCAGAGGTTAACAGGAAAC910.1441606995754388No Hit
AACTTGGGGAGGCCTCGGAGGCGGGGCGATGGCCACCTCCCACCGAGTGGCG910.1441606995754388No Hit
ATTACGGGGAACCTTTGATAATTTCTGACATGATTAATATTTATCTTCTTTT910.1441606995754388No Hit
TTGGAACGGGGCAAGCCAGGAATTAAATGCTCTTTTTAAGAATAACAAAAAA900.14257651606362082No Hit
TAATCAGGGGGGACTTTGATATCATGCAGCAGAAGACCAAATTATTTCTCCA900.14257651606362082No Hit
AACGCAGGGGATGGAGCATGGGCAGATTTCAGTGATACGAGAAAGGGGACTG890.14099233255180282No Hit
ATGCATGGGATGACATTGTTGGGAGATATGAGGATCTGTCCAAGTCTGTTAA890.14099233255180282No Hit
CATTATGGGGGTGATTGATGGTGGCTAGCTTGTTCCTATAAACTTTCTTTTG890.14099233255180282No Hit
TAAGCCGGGGTATTTCTACTATAAAATAGAATCAACTTGGGTTATATTTGTC880.13940814903998477No Hit
CAAACCCTAGAGTACACACGTCCCAAACTCCCCTGTGCCCTCAAGTCCTACA880.13940814903998477No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCA880.13940814903998477No Hit
ACTTTTGGGGTCAACTGGAAGTGCATCCATGATCACTTTATCCAGCTGTCTC870.13782396552816678No Hit
TCTGAAGGGGGATCTGCACGTGGGATTTCTTTTTCTCTTGCATTTCCATTTA870.13782396552816678No Hit
ACAGATGGGGCAAGAAATTATACATAAGTGGTCATGATCTTAGGGAGACAAA860.13623978201634876No Hit
CAGCCTTGTGATGTTTGGAGCATAGGTTGCATTCTTATTGAATATTACCTTG860.13623978201634876No Hit
TATGGTGGGATCCTTTATTTCAAGGAAAGATTGTATATTATAAAAACAAATA860.13623978201634876No Hit
GCGCACAGGCATCTATATGCACAAATGAGATGTAATCATGTACCAAAATACA850.13465559850453077No Hit
AACAAGGGACCCAGGCTTGAGGCAGCGGCGGGAACCACTCGGTTTGCTGCGA850.13465559850453077No Hit
CGTTTTGGGATCGAAGAAAGATTTGAATGGCTATGTAATTTTAACACTATCT850.13465559850453077No Hit
CGGGTTGGGTGTGAGAGAAACTAGATGACTGTAAACTTGGTCACAGGCCTGG850.13465559850453077No Hit
TAATATGGGTATTGACTAGTGTCAAACTATTGTAAAATAAAGTATTTAAAAG850.13465559850453077No Hit
TGCCAGGGTCCTGCTTGCTTCTGTGAGGTCTGTATTTTTCAAACTATGGATT850.13465559850453077No Hit
AACCATGGGATGTCTTATTTCATTTCCTGTTCTGCTTTTTAATTTTATTGTG840.13307141499271274No Hit
CGCCTTGGGAGCTCAATGGTTGAGGTTCTAGGATCAATTGCCTTGCAGTTTT840.13307141499271274No Hit
TTATAAGGGGCCCTAAGTGAAATGAGGTTTCTCCGTAATGTAGAATAGGTGA830.13148723148089475No Hit
ATTGCAGGGCACCACAGCCGTCTGCTTCACCGTCGTCATCTTCTCCATGCAG830.13148723148089475No Hit
GCTGCGGGGATATGTATGTTCCTTTACACCTAAGAACCTTTAGATATAAATG820.12990304796907673No Hit
AGTCAGGGGTACAAGGACCCAAGGTTCTACCGCTCGCCCCCTCTTCACGAGC810.12831886445725874No Hit
TATCGAGGGATTCCTTAGAACCCAAATATCCGTTTAACAGCCATCTTTTCAA810.12831886445725874No Hit
AGGTAGGGGATAAGTACTGAGGAAACTGAATTGGAACACACCAGCACTGTGG810.12831886445725874No Hit
GCAAAAGGGCGATCTGCTACGGGGCTTTTCTTCTCTGTGATAATCCTATTAG810.12831886445725874No Hit
GCATTTGGGGAACCACTACTAATGTCCCTTCCTCTTCTTCCCCAAAGTTAGG810.12831886445725874No Hit
AGCTAGGGTCTCAGCAGGGGGGGCACATCCATCTGCCTTCCCTAGAGACTAG810.12831886445725874No Hit
CATCAGGGGAACTGAGTATAGCCTTGGGTAGCGTTTTTGCTCAAAGCTTGCT800.12673468094544074No Hit
GTGAACGGGAGTGGGAAGCCCAGACTCACCAATGATCTCTTTGTCACCACAG800.12673468094544074No Hit
TACATCGGGTAATCTCCTTTATTTGAGTTTTAATTTTAATTAATATGTTTTC800.12673468094544074No Hit
TATGCAGGGATTATCAAGGCTGTAAAAGCTTGAATTTGCCTTTTCCACATCT800.12673468094544074No Hit
GAGTGGGGCTGAGTTTCTATGCTGTATCTCAGTGCTCAGTGTCATGTAACTG790.1251504974336227No Hit
TACATTAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG790.1251504974336227No Hit
TAGCCAGGGGGGAAAATTCATGTTGCTGCAGAAGTAGGCTAAGGCAGACCAC790.1251504974336227No Hit
TGTAAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC790.1251504974336227No Hit
CATAATGGGGTGTGGGGGATTTTCAATAAATTTTCTGCAAAGTCTTAAACAG790.1251504974336227No Hit
CGTTTAGGGAGATTTATAAAAGGGGTTAATTTTTGGCCTACTCACAAATATC780.1235663139218047No Hit
GGCCCATGTACATGTATTTTTAGAAATATATTTGCCTCCTTAAAATGGAATA780.1235663139218047No Hit
TAGCTATGGGGAGTACAAAGTAAGCCATGTATCTCAGGAAGGTAACTTCATT780.1235663139218047No Hit
CAACTAGGGAACAGTGTATTTTAGAGCTCAAGAATCTGAGGATTAGAAAGCT780.1235663139218047No Hit
TCGACAGGGAGCAAATGTTACTTATAAATCAATAATTCAACCGTAACCTGGA780.1235663139218047No Hit
TTTGAGGGCCTTTCCGTCTGGCGGCAGCCATCAGGTAAGCCAAGATGGGTGC770.12198213040998669No Hit
TTAAAAGGGGAGTTTAAGATTAGGAAACGTGTTCTTCATTTTTGTATCCCTA770.12198213040998669No Hit
ATTGGCGGGCGGCCAAGGCAATAAATCAGAAACAAAAATAGTGCCAATGTGT770.12198213040998669No Hit
CTATATAGGGGGCTTTGCAGCTCTTCATCTGCCTGCTTTTCAGTCTATTGTA770.12198213040998669No Hit
CAAGCAGGGATTCCTTTTATTAACTTTAAAACTGGACTTATCGGGTTCAAAT770.12198213040998669No Hit
GATATCGGGATGCAAAAGAATAAATGAATAAGATAAAGTTAATTTTTGATAG770.12198213040998669No Hit
CGAGTAGGGGGATGATTCTCACCTTTACTCCTCAGTAAATCAGGAATGGGAA760.12039794689816868No Hit
TGCGCTGGGTCCAGTCACCACGACCTTTTATACTTTTGTTCTTTTGCAGTTC760.12039794689816868No Hit
GTGTGCGGGTAAAGATTTTAGTCATCTGGTGGAAAAGGAGACTTTAAGATTG760.12039794689816868No Hit
CTGTCAGGGGGGCCATAGCCAGAGAGACAATAGACCTTCTGGGCCTTTCCTC750.11881376338635068No Hit
CATCAGGGGACTTTCAATAAGCAAACCACAAAGGAAAACAGTTACCCTTAGG750.11881376338635068No Hit
ATGTGCGGGAAAGTACTAAAAGAAAACATTGAGAAAACCCTCCAGGACATTG750.11881376338635068No Hit
TACCTAGGGGCTTTACTGCATCTCACAAATTTTAAGTTGTGTTTTTATTCTC750.11881376338635068No Hit
AACAGCGGGGTACTAGGGAAATGTTTCATTTTGCATAATGAAACATTTTGCA750.11881376338635068No Hit
TCAATGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC740.11722957987453267No Hit
TCATCAGGGCTGTAATTATCAGTGATATGTGTGGGTTTGCATTTCACTATTT740.11722957987453267No Hit
ATCAGTGGGCATGGAATCCCGTTTTCAAGTTAAAACCTATTTTTTTAATTTA740.11722957987453267No Hit
ACGCCAGGGCTGTCATCAACATGGATATGACATTTCACAACAGTGACTAGTT740.11722957987453267No Hit
ACACGTGTTGAGGGAAGGGACCTGGTGGGAGGCGATTGGATTCTGCAGGTGG740.11722957987453267No Hit
TCGCGTGGATCACTTGAGGTCAGGAATTCGAGACTAGCCTGGCCAACATGGT740.11722957987453267No Hit
ATAGAAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA740.11722957987453267No Hit
GAGTCTGGGGGAGAGGGAACTAGGCTTTCAAAGATAACCCCCTTTTCCTTCA740.11722957987453267No Hit
CTTGTTGGGACTACAGTTGACATCCTGGCTGACAACTGTGAAAAAGAACCTT730.11564539636271466No Hit
ACGTGCGGGTCCTGTACAGCCTGCAAAACTGTGAGTCAATTAAACCTCTTTT730.11564539636271466No Hit
TGATGAGGGTGCTGAAAACTCCAGTTCACTAATCCAGTTCACTAATTCTGTC730.11564539636271466No Hit
GCTACAGGGAGAAGGGAAACGTGAAGAAGGTGAAGATGGCGGTGGCCAGGGC730.11564539636271466No Hit
CCTAGAAGGGGAAGACATTTAGACAGTTGAGTCCAAGTTAGAGAGCATTAAG730.11564539636271466No Hit
TGAAAACGGGATAGCTTATGCAGTCTAGGAGCTTTCCAATACTCATTTAATT730.11564539636271466No Hit
CATACAGGCAACATTAAGAACTCAGAAGAAAGGAAGTTTTAGCCTTCTGCCT730.11564539636271466No Hit
TATGCCGGGGATTGATCCATAACTATGGATCCATAGTTATAAATTGGGATTG730.11564539636271466No Hit
TAAAGCGGGCAATGAATGATAATATATTATCATTAAAAATAATAAAAAGCCC730.11564539636271466No Hit
TAGCCTGGGGAGTACCCTAGGAAGAAGTCAGAGCAATGGATACAAATGACCT720.11406121285089665No Hit
GCTATTGGGATGTACGTTTGTATATATTTTCCCTTTTTTGTATGACTATTTA720.11406121285089665No Hit
TTACCAGGGGAATCAAGCACACTGTATGTTCAGTAGGTTGAACTATGAACAC720.11406121285089665No Hit
ACTTGCGGGTCCCCATTTTAAGGCTGTGGGAAGAAAGGCCTTTAGGGATGAA720.11406121285089665No Hit
TCGGTTGGGACGACCCTGCTGCCGAAGCTGATTCCCTCCGGTGCAGGCCGGG720.11406121285089665No Hit
AACGCCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA720.11406121285089665No Hit
GCTACAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC710.11247702933907865No Hit
AGGTAAGGGTTGCAAAGGTATCTGAATAATTTTTCATGTGCATCTTTTGTCG710.11247702933907865No Hit
GAAATTGGGGTTTAGGTTATAGGAACGGATTTCGATATTCAGAAAAATATGT710.11247702933907865No Hit
ACTGCTGGGAGGGGGATTCGCAAGAAAGAAGGTAGACATCCCACCTGAAATT710.11247702933907865No Hit
TTAAGAGGGATACGCTTTTAAAATAAGACAAATCTACTTGATAATGTACCTT710.11247702933907865No Hit
CTAAAAACGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGG710.11247702933907865No Hit
ACACTAGGGGCATGTTTTTAGTTTCAGGACATACCAAAGAGTGAACTGCTGC710.11247702933907865No Hit
CGCTCAGGGCTGAAGACAGAGCAAAATGCTTTGAAAAGAATGAGGCCATACA700.11089284582726064No Hit
TGGCATGGGAGTCCAAAATTCAGGAACTACTAGAGTGAAATGATATTAAGTG700.11089284582726064No Hit
ATGCCGGGGAATATCAGAAAGCTGCTGAAGAGGTGGAAGCAAAGTTCAAGCG700.11089284582726064No Hit
CTTAGTGGGATAGAAGGATGAGGTCAGTGTGAAAGGGTATTGAAGATGTGAC690.10930866231544262No Hit
AATCTAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC690.10930866231544262No Hit
AACTCTGGGGATGGCACAAATCCTGAAGGATATGGGGATTACAGAATATGAG690.10930866231544262No Hit
CGTCCAGGGGTACCACCACAAGGGATGCCCTACTCTCTCGCAGCTCTTGAAA690.10930866231544262No Hit
ATTGCTGGGAACTGGGAAGATGTATTAAAGAAACCCAAATTTCTGACTTCTC690.10930866231544262No Hit
TAATTAGGGATGGCTGCATAGTATTCCATGATGTATATGTGCCACATTTTCT680.10772447880362461No Hit
TAGCAAGGGAGATGTAATTTTGATAGCACAGTTATTTTCATTATTATGTAGA680.10772447880362461No Hit
GAATGCGGGATAATTTAGCTGTGCTTAATACCTAGAGTCAACATTGATTTAT680.10772447880362461No Hit
AAATAGGGGAAGTAGACAGAGACTATCTGGCTGTAAAGCCTGAGATATATAC680.10772447880362461No Hit
GCCGTAGGGTGACCAGCACACATATAGCCATGGGAGGTGTGTTCTACAGACC680.10772447880362461No Hit
CTTGGAGTGGGGCAGTATGGGGGAAGGGCTGTGCAAGCCTGCCTGTATTTAT680.10772447880362461No Hit
GCTGGGATAAGGCAGATGTTTATTTTATCAAGCTATTTTATCTCTACATTTA680.10772447880362461No Hit
GCAAATGGGTCTGGTGCTGGGCCTGCACATGTATCCCATAACTTAAAGTATA680.10772447880362461No Hit
TCAACTGGGAAGGCTGAATTGAGTGACTCCCCAGAATGAAGATGAGAAGGTG680.10772447880362461No Hit
TTGCTAGGGGATGCAGCAAGATTTTTAAAAATCTCTGCCAGTCAACACACAC680.10772447880362461No Hit
AGATAGGGGGAACACAGAACATCCTTCTATTTATTTGTATCTTCAGTTGTCT670.1061402952918066No Hit
GCGAGGGAGGCTGGGCAACAGAGTGAGACTCTGTCTCAAAAAAAGAAATAAA670.1061402952918066No Hit
ATCTAGGGAGGAGAAACATCAGAAGCAGTTGGAAAGGGCACAATTAGAGAAT670.1061402952918066No Hit
GCTGGTGGGGGCCTACAGAATGCGGCCTCTGAGACATGAAGACACCATCTCC660.1045561117799886No Hit
GTTCAAGGGGGGAGGAGTGGACACAGTGTTATGGCGGGTGGGTGCAGGGGAC660.1045561117799886No Hit
CCTCGGGTAAGATAGGACAATGTGGAGAATGGGGGGAAGAATGCAAAACGAT660.1045561117799886No Hit
TTATGCGGGAGGGAGAGAGAGAAAAAATGTTTTAGGTTAAATACAAATAAAA660.1045561117799886No Hit
AGTACAGGGCTATAATTATTTGACAAATGTTACATACATGGAGTCACACAGT660.1045561117799886No Hit
CCGTCGGGGCAATTTAGGAATGCTCAATGTGCTGTTGATTCTTTCAATCCAC660.1045561117799886No Hit
ACCACCGGGAAGAATCCGTATTTCCAAATGTGAGCAAACCCTTGCCCAGCAG660.1045561117799886No Hit
TTAGTGGGGCAAATACTTTCTTCACCAATCTCATGAGGAGAGGGAACATGCT660.1045561117799886No Hit
ATTGTAGGGAGAAGAGACTGTTAAAACCAAAACAATGATGGGCAGCTCTTTT660.1045561117799886No Hit
AAAGCAGGGAGGACAAAGTTCAGCGCTTTTGGTGCATTTCATATTAAGGATG660.1045561117799886No Hit
CCATTAGGGGGTTTTTCTTTTCTTTATTTTTAAAGAAATGCACTTGCCTATG660.1045561117799886No Hit
CGTTATGGGCAATCTTCTTTCTTTATGCAGTTGAACATATCCAGTTTGGAAA660.1045561117799886No Hit
AACTCTGGGTGTCTGTTTTGGACTTGATGCAGGGTGGTTACCCATCACGAGC660.1045561117799886No Hit
GTCACGGGGATATCTATAACATGAACAAATTTATGCAAAATTAAGATTAAAA650.10297192826817059No Hit
GATCAGGGTATCTAATTGGCAGCTAAAGACAGCTAGAATCTCCAGGGTTCCT650.10297192826817059No Hit
AATTTTGGGGGGATATAGTGTCCTTAAGCATGAACTGCTTTTTTTTTAAAAA650.10297192826817059No Hit
AGTCACGGGCGATCTTTCGGCGGGCAATTTTTAAATGAGTAATGTGTTTATT650.10297192826817059No Hit
AATGCAGGGTAATGGATATGGACTACATGCCACTACCTGCAACTTTGTCATC650.10297192826817059No Hit
GCATAAGGGGAAAAGAAAATTGTGTAATGCCTGAATCATACATTTTCATTCC650.10297192826817059No Hit
ATACATGGGATTGTTTCACTTCCACAGGTTTGACAGCTGCAGATGGTCTCTA650.10297192826817059No Hit
TAATATGGGAAGGCAGCTGAGCAAACAGCTGCCCGGGAACAGGCAAAGGAGG650.10297192826817059No Hit
CTGCTAGGGAGAACTTCAGAGGTAGAGGTTTTGGGAACACAGGAACATATCC650.10297192826817059No Hit
CTCTGCGGGAAGCTCCCAAACCCTCAGTCATTCTCCAGCAGAGACCTTTGCT650.10297192826817059No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCAACTCGTATGC650.10297192826817059No Hit
GTCTTGGGGGGAAGCTGGGAAGTCCAATATCAAGGTGCTGGTATCTCATCAG650.10297192826817059No Hit
GGTTGAGGTCTCCGTCCTTCATTTCTGTCATTCAAGCTCAACGGCTATTGTG650.10297192826817059No Hit
TTATGGGGCAGTTATTTTCTTTTTCTTTTTAGAGATGCTAACTTTGTTTTTC650.10297192826817059No Hit
ATATTTGGGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGT650.10297192826817059No Hit
AGTCCGGACTGGAGAGAAACCCTACAAATGCAATGAATGTGGTAAAGCCTTT640.10138774475635258No Hit
TTAAAGGGGCGATTGAGTAATAGCTGTTTGCTTATAGCTCGTATACCCAGCT640.10138774475635258No Hit
TATCTTGGGATGTACTGTGAATCGTTCCTGATAAGTGAATAAAACATTGTGA640.10138774475635258No Hit
TTCATAGGGATAGAAGGAGATGATATGTTTTCTTGCATTCTTAGATGTATAT640.10138774475635258No Hit
GTGCCTGGGCAATGGAGGAATCTGCATCAGGATCACCAGTCACCTGCTGCTC640.10138774475635258No Hit
GTAACCGGGGGTCTTATATTTGGAAAAACCAAATTCACTAAAACATGATTAG640.10138774475635258No Hit
GTATAAGGGACAGGATTTTGGAATTGAGATAGTGAAAGTGAAAGCAATTGGA640.10138774475635258No Hit
TCAACAGGGGAAGTTTGAAAGTCCAAGAAGACAGAAATGCTCAAATTGTCTA640.10138774475635258No Hit
AGGTATGGGGGGCAGAGAATGTATAAGGATGAAATTTTGTGACCTCAGCAAT640.10138774475635258No Hit
TGCCTTGGGGACAATTAAATTATTATTGATAATGTAAGTTATGAAATATTAA640.10138774475635258No Hit
AGCTCAGGGCAGAAGCAATTTTATAACAGATTTCATTTTAACAAAATACTGA640.10138774475635258No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)