FastQCFastQC Report
Sat 31 Dec 2022
SRR5846002.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846002.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87343
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGCCGTCT7840.8976105698224243No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGC7640.8747123410004236No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGC1330.1522732216663041No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCA1000.11449114411000308No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCAACTCGTATGC940.10762167546340291No Hit
AGTGATGGGATAGTGGTGCAAGCTAAGTTAGTTGATCCAATATCTCCTACCC910.10418694114010282No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)