FastQCFastQC Report
Sat 31 Dec 2022
SRR5846001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87157
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGC7930.9098523354406416No Hit
CTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGCCGTCT7340.842158403800039No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGC1200.13768257282834426No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCA950.10899870348910587No Hit
TAACAAGGGAAGCCAAACTTTGTGATTCAGGAGAACTGGTCGCCATCAAGAA910.10440928439482773No Hit
GAACATGGGCGCTCTTCCGATCTAGCAATGGCATGCTTTTACTGTGTAGGAG880.10096722007411911No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)