FastQCFastQC Report
Sat 31 Dec 2022
SRR5846000.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846000.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85858
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGCCGTCT7530.8770295138484475No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGC7160.833935102145403No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCAACTCGTATGC1290.15024808404574996No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGC1270.14791865638612592No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCA1080.12578909361969765No Hit
AGTGATGGGATAGTGGTGCAAGCTAAGTTAGTTGATCCAATATCTCCTACCC1010.11763609681101353No Hit
CACAATGGGGGACTAAATTCTGAAGAGTGGCCATGGTTTGGGAAGATAGAAG880.10249481702345734No Hit
GAACATGGGCGCTCTTCCGATCTAGCAATGGCATGCTTTTACTGTGTAGGAG860.10016538936383329No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)