FastQCFastQC Report
Sat 31 Dec 2022
SRR5845984.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845984.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64742
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGCCGTCT7641.1800685799017638No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGTATGC6581.0163417874023046No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGC1380.2131537487257113No Hit
CTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCCTGTCTCTTATAC1100.1699051620277409No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCAACTCGTATGC910.14055790676840382No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCATCTCGT840.12974576009391123No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCA820.12665657532977048No Hit
AGGTTAGGGCAAGGTCTGCTCCTGGAGTTCCAGGTTCTTGGTTAATTATAGT750.11584442865527787No Hit
CTTATACACATCTCCGAGCCCACGAGACAGGGAAGCACTGTCTCTTATACAC740.1142998362732075No Hit
TAGGGGGGCATATGTTTAGTAACACATAAAATTAACTGTGTGCCATGTGCTG680.10503228198078526No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGGGAAGCACTGTCTCTTA650.10039850483457415No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)