FastQCFastQC Report
Sat 31 Dec 2022
SRR5845943.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845943.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences128440
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGTTACATCTCGTATGC6810.530208657739022No Hit
CTTATACACATCTCCGAGCCCACGAGACGGAGTTACATCTCGTATGCCGTCT6500.5060728744939271RNA PCR Primer, Index 14 (95% over 22bp)
ATATTTGGGATTTCAGCTTCAACAAAAAGCTACCATATATTAGAAGGGTCAC1440.11211460604173154No Hit
AAGCCGGGGGTCTAACATCCAGAATCTAGAAGGAGCTTAAACAAATCAATAA1370.10666459047025849No Hit
CGATACGGGATTTCTGACCATGGTTGTGTGTCTGTAGTGGACCCACATGGAA1300.10121457489878542No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)