FastQCFastQC Report
Sat 31 Dec 2022
SRR5845903.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845903.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences201337
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGCCGTCT11270.5597580176519964No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGC9480.4708523520267015No Hit
GCTGAGGGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTT2800.13907031494459537No Hit
CAAATTGGGGCCTAAATTTAGGAGCATTCTTAATTTTCTAGTATCGAGAATA2770.1375802758559033No Hit
TGCATAAGGGAGAGTGGAGGTCTTTAAACAAAACTTTTTGACCATTTCTCTT2540.12615664284259726No Hit
AATGTCGGGAACCATCATCAATGTAAAAATACAAGGATTGTGAAAACATGGA2320.11522968952552189No Hit
TAGTCTGGGAGGATCTCTTGAGCCTGGGAGGTCGAGGCTGTGGTGAGCTGTC2160.10728281438583073No Hit
TTCATGGGGCTTGTGAGGATTCACTGAAAATGAGAGTCAACCACTAAGGAGA2020.10032929863860096No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)