FastQCFastQC Report
Sat 31 Dec 2022
SRR5845901.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845901.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences197689
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGCCGTCT10450.5286080662049987No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGC9030.45677807060585063No Hit
TGCATAAGGGAGAGTGGAGGTCTTTAAACAAAACTTTTTGACCATTTCTCTT3040.15377689198690872No Hit
GCTGAGGGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTT2710.13708400568569823No Hit
CAAATTGGGGCCTAAATTTAGGAGCATTCTTAATTTTCTAGTATCGAGAATA2620.13253140033082264No Hit
AATGTCGGGAACCATCATCAATGTAAAAATACAAGGATTGTGAAAACATGGA2200.11128590867473659No Hit
TTCATGGGGCTTGTGAGGATTCACTGAAAATGAGAGTCAACCACTAAGGAGA2110.10673330331986099No Hit
TAGTCTGGGAGGATCTCTTGAGCCTGGGAGGTCGAGGCTGTGGTGAGCTGTC2030.10268654300441603No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)