FastQCFastQC Report
Sat 31 Dec 2022
SRR5845855.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845855.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences137473
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGCCGTCT11850.8619874448073439No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGC11110.8081586929797123No Hit
AGTTCGGGGGGGGAATACATACCACTGATTTTTGGACCCATAATTTGATGAT1760.12802513948193464No Hit
CATCGGGAGGGCAAAGGTAATGCAGTTAATCTCTGAATTACTTTGGATTCCT1650.12002356826431371No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTACCCTC1500.10911233478573974No Hit
GTATATGGGGGGAATAATTGAGTCACGTGCTAGAGCTGTGGACCTTATGACT1480.10765750365526322No Hit
CTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCCTGTCTCTTATAC1430.1040204258290719No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)