FastQCFastQC Report
Sat 31 Dec 2022
SRR5845854.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845854.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences134621
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGCCGTCT12130.9010481277066728No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGC11200.8319652951619733No Hit
AGTTCGGGGGGGGAATACATACCACTGATTTTTGGACCCATAATTTGATGAT1910.14187979587137223No Hit
CATCGGGAGGGCAAAGGTAATGCAGTTAATCTCTGAATTACTTTGGATTCCT1720.12776609889987445No Hit
GTATATGGGGGGAATAATTGAGTCACGTGCTAGAGCTGTGGACCTTATGACT1370.1017671834260628No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTACCCTC1360.10102435726966819No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)