FastQCFastQC Report
Sat 31 Dec 2022
SRR5845853.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845853.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130932
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGCCGTCT12210.9325451379341949No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGC10460.7988879723826108No Hit
AGTTCGGGGGGGGAATACATACCACTGATTTTTGGACCCATAATTTGATGAT1830.13976720740537074No Hit
CATCGGGAGGGCAAAGGTAATGCAGTTAATCTCTGAATTACTTTGGATTCCT1490.11379952952677726No Hit
CTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCCTGTCTCTTATAC1390.10616197720954387No Hit
GGACCAGGAGTTTGCGAAGAGGTGACTTTGGGAGGGGTTCAGGATGGCCAGA1370.10463446674609722No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)