FastQCFastQC Report
Sat 31 Dec 2022
SRR5845840.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845840.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences169901
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGCCGTCT11660.6862820112889271No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGC11120.654498796357879No Hit
GAGCCTGGGGTTATAGATAGTTGTGGTTTTAGAAGCTATTCTATTTGTTATT2630.1547960282752897No Hit
TGGCCTGGGCAGGTAAGCCTTATAGCAATCTTGCTCCCACATAAAAACTGCA2580.15185313800389638No Hit
GTAGTGAGGGTTTCCGTGCGGTGCGGCGAGTGAGGCCCCGGTCTTCCTCCTC2170.127721437778471No Hit
AGCATGGGGCCGCAGCCGGTCGTAACCAAGTTGTGTCCTGTCAGCCGCTGTC2060.12124707918140563No Hit
CAATCGGGCGATCTATAGCGGGATCACACTAGAAAATATTTGCTTAACACTA2050.12065850112712698No Hit
GCCAAGGGGTCTGCCCTCATGCCAGCAGGAGTCATGCCAGAGATCATATCTG2040.12006992307284832No Hit
GAAAATGGGGCTTGATTAATAAATGCAAACAAAAATATATGCTGGCAATTCT2020.11889276696429096No Hit
TAGTTAGGGCACCACTTATGGGAAACGTGGATCCTTCCAAAATAGATGAAAT2020.11889276696429096No Hit
AAGAATGGGGCAAAAGATCTACCTGCAAGAATATGAAAAGACAAGTGGATAA1960.11536129863861895No Hit
CCAGGGGGGCCGTCGGCTCCGCGGCGCCGCCATGGCCGACGTGGAAGACGGA1950.1147727205843403No Hit
CAAAGCGGGTATGTAAGACAACCATTGCAGAGACACAAAGTAATCAGATTCT1940.11418414253006164No Hit
TTCAGAGGGGGGCGTTCTATAAAAACCTTCAAGAACTTATTAAAAATTGGTA1930.11359556447578295No Hit
TTCAACGGGGTAAGATAGTCGATATAAATCCCAATATATTAGTAATTTCATT1920.1130069864215043No Hit
GCCTCCGGGACCACTGTATCCTTAGCACCTAGTCTGACAGCTAGAACATACT1920.1130069864215043No Hit
GCATACGGGAGACATTAAGTCAACAATAACAATTGTTTCCCAAACAATTGAA1920.1130069864215043No Hit
CTCGCCTGGGGTATATAGTATAGCAATATTTATAAGGGTTTAATAAATAGAG1910.11241840836722562No Hit
GCGACTGGGAGATACATTACATTTGTGATAGTCTTCCTCAAAATTCATAACC1910.11241840836722562No Hit
CTATAAGGGCTAAAATTGCATTAGAAAGATGAAAATGATTTGTTTAATCTTC1880.11065267420438962No Hit
TAGAACGGGGAGCCGGAGCCGGAGCGCGCGAGCTCGCAGGGCGCGAGGAACG1870.11006409615011094No Hit
GCAGCCTTGAACTCCAAGACTCAGGCGATCCTCCCACCTTAGCCTCCTCAAT1870.11006409615011094No Hit
TATAATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1860.10947551809583228No Hit
CGTAGAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1860.10947551809583228No Hit
GTTGGTGGGTGCGGCGCACCAGCATGGCACGTGTATACATATGTAACTAACC1850.10888694004155361No Hit
GTCATCGGGGAAAAATGTTAATAACAAAAATTATAGAAGACACAAATAAATT1850.10888694004155361No Hit
GGAATAGGGCAGGTGACAAGATGTTGTGAGGGGTTTTGAGTCATCCAGTCCT1840.10829836198727495No Hit
GTCGAGGGGATGAAATAAAAATCAGAAAAAATTTAACATTAGCTATTTCTAA1840.10829836198727495No Hit
TGGCTAGGGCTGAGAGAGGGGAAAAAATAATGTTGCATTGGGTTGATGTTTG1800.10594404977016027No Hit
TCACACGGGATCCCACTCCGCTCTGGAACTTGTCGGATTTTTACCTTTCGTT1800.10594404977016027No Hit
TGTAACGGGGAGCGGGAGTCGAGCGAGAGCCTGTGGAGGAGTCCGCCTGCTG1790.1053554717158816No Hit
CTTCCGGGGCGATCTACTAAAGGGGCAAAGGGCAGAGTGGGAAAGGTGGGAG1780.10476689366160294No Hit
ACCAAGACTGACAAAGAAAAAGAAGACAAAAATTACCAATATCAGAAACAAA1770.10417831560732425No Hit
TCAACAGGGGATCTAGGCCTGGGAATATTTTGGGGGTCTTTGTGTCTTAGTT1770.10417831560732425No Hit
GAAAACGGGCTGTGGCCAATGAAACACTTGAATATTTAAACCTAACCCCACT1770.10417831560732425No Hit
CTGGCGGCGGGTGGAGGATAATGAAAAGTCCGTGTTTTGAAGTTTTCAGATT1760.1035897375530456No Hit
TCATTGGGGGGCTACTCAAAACTCATAACCTGTACCATGATGGAATTTGATA1760.1035897375530456No Hit
ACAGACGGGGATCTTTGACGGGGGGAGTTTCAGACCTACGACTGATGTAGGG1750.10300115949876693No Hit
ATTGACGGGCGCTCTTCCGATCTATAAACGGGATCTGCTAGAGGGCGCTCTT1750.10300115949876693No Hit
TTAGTCGGGGCCATTTTGTCATAGAATGTAAAAATTGGTTAACTTTACAAAT1750.10300115949876693No Hit
CAAAATGGGAGTTTTAAAGCCTCTGCATAATTGATAATAAAAATGCATGACA1740.10241258144448827No Hit
CTAGAAGGGGGAGACACCTCCTCCCTGGGTTGTGGTACTGAAAACTAAAGGG1740.10241258144448827No Hit
TGGTCAGGGGACGCTCTTCCGATCTGTCTCAGGGGAGGCATTGAGGCAGCCA1730.10182400339020958No Hit
TATAAAGGGGGATTTTCACCACAACATAAGATCACTAGCTTCGAGGAAGCCA1730.10182400339020958No Hit
GGCATGGGGGACTAGCATTTGGCAGAGAGCAAAGCAGAAGATGACATCTGGC1720.10123542533593093No Hit
CGAACTGGGACCATGAACAGCTTTCTGTAGCAGAGATCACCAATGCTTGCTT1710.10064684728165227No Hit
CAACCTGGGAACGAGACCACTGATAACAACGAGAGTGCTGATGACCACGAAA1710.10064684728165227No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)