FastQCFastQC Report
Sat 31 Dec 2022
SRR5845839.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845839.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166520
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGCCGTCT12010.7212346865241412No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGC11270.6767955801104972No Hit
GAGCCTGGGGTTATAGATAGTTGTGGTTTTAGAAGCTATTCTATTTGTTATT2760.16574585635359115No Hit
GCCAAGGGGTCTGCCCTCATGCCAGCAGGAGTCATGCCAGAGATCATATCTG2170.1303146769156858No Hit
TGGCCTGGGCAGGTAAGCCTTATAGCAATCTTGCTCCCACATAAAAACTGCA2140.12851309152053805No Hit
AGCATGGGGCCGCAGCCGGTCGTAACCAAGTTGTGTCCTGTCAGCCGCTGTC2030.12190727840499639No Hit
GAAAACGGGCTGTGGCCAATGAAACACTTGAATATTTAAACCTAACCCCACT2010.1207062214748979No Hit
AAGAATGGGGCAAAAGATCTACCTGCAAGAATATGAAAAGACAAGTGGATAA1990.11950516454479942No Hit
TAGCAGGGATAAACTTGGTTTTAAATCACCAACTAGTAAAGATGACAAAAGG1920.11530146528945472No Hit
TAAAGTGGGTCTATCCGCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCT1910.11470093682440549No Hit
GCAACCGGGATTTTCCCAGCTGTAAATTAGGAACTTGGCATTGAACACTATG1900.11410040835935624No Hit
GCCTCCGGGACCACTGTATCCTTAGCACCTAGTCTGACAGCTAGAACATACT1900.11410040835935624No Hit
CAAAGCGGGTATGTAAGACAACCATTGCAGAGACACAAAGTAATCAGATTCT1890.11349987989430699No Hit
GCTTAAGGGAGTTCCTTTTCCCACAAACCTTCATTGTTTAACAAATTTTGGC1870.1122988229642085No Hit
TATAATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1860.11169829449915927No Hit
GTTTTAGGGCTGACTCCCAGAGGCTGCCACCGGGGAGAAGCAGCGGTCCTCC1850.11109776603411001No Hit
TAGAACGGGGAGCCGGAGCCGGAGCGCGCGAGCTCGCAGGGCGCGAGGAACG1850.11109776603411001No Hit
GGAATAGGGCAGGTGACAAGATGTTGTGAGGGGTTTTGAGTCATCCAGTCCT1840.11049723756906078No Hit
TGTACAGGGTAACCCAATTGTCTCAGCCCAAAATCTCCTAACACTGATAAAA1840.11049723756906078No Hit
AAGAGAGGGGGTGAAGCTCGCTGCGATGCTGAGGCTGGACGGGGAGATGATT1830.10989670910401153No Hit
GTCTGGGGGGGCGCTGGGGATGGTGGGAGCCTGCGCAGCTGGCTGGGCGGTC1820.10929618063896228No Hit
TGGTACGGGGATCTGCCTAGGGGGCGGGCAGCGCTGCTGCACAAGACCATTC1820.10929618063896228No Hit
CGTAGAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1820.10929618063896228No Hit
CCAGGGGGGCCGTCGGCTCCGCGGCGCCGCCATGGCCGACGTGGAAGACGGA1820.10929618063896228No Hit
TTGAAGGGGAAACTTTATAATTACTTTAATATTTTGATAACTAGAAATCTAG1810.10869565217391304No Hit
GGTGCATGGGCTTCCCTCCACCCTCACTCCAACCACCCCAATGGGGGTAATT1810.10869565217391304No Hit
CAATCGGGCGATCTATAGCGGGATCACACTAGAAAATATTTGCTTAACACTA1810.10869565217391304No Hit
TTCCTGGGAATGCTGGTCTAGCTGGCGTGGTATGTTTATAGGCGAATTTCAG1780.10689406677876531No Hit
TGGCTAGGGCTGAGAGAGGGGAAAAAATAATGTTGCATTGGGTTGATGTTTG1770.10629353831371607No Hit
CTTCCGGGGCGATCTACTAAAGGGGCAAAGGGCAGAGTGGGAAAGGTGGGAG1770.10629353831371607No Hit
TGCTTAGGGAATGACACAATTAAAACTTTTAAATACTGAGTACAAAGTGCAA1760.10569300984866682No Hit
GTCGAGGGGATGAAATAAAAATCAGAAAAAATTTAACATTAGCTATTTCTAA1760.10569300984866682No Hit
TAAGCAGGGATCCATGCTGACTTTCATGATTTAGAAGTCTTTAACTGAATTA1730.1038914244535191No Hit
GTCATGGGGAACTTGACTCTTTGATTGTATTTCTCCTATAGTAATGCTTCTC1730.1038914244535191No Hit
CTCGCCTGGGGTATATAGTATAGCAATATTTATAAGGGTTTAATAAATAGAG1730.1038914244535191No Hit
GCGACTGGGAGATACATTACATTTGTGATAGTCTTCCTCAAAATTCATAACC1720.10329089598846986No Hit
CTATAAGGGCTAAAATTGCATTAGAAAGATGAAAATGATTTGTTTAATCTTC1720.10329089598846986No Hit
GTAGTGAGGGTTTCCGTGCGGTGCGGCGAGTGAGGCCCCGGTCTTCCTCCTC1710.1026903675234206No Hit
GCATACGGGAGACATTAAGTCAACAATAACAATTGTTTCCCAAACAATTGAA1710.1026903675234206No Hit
TAATGTGGGAAGGAATCATTGTTTGGCATTGAAAATAGGAGAGAGATCATGA1690.10148931059332211No Hit
AAGAACGGGTAATGAAAAAAGAATAAATTTAACAAACCTTGGGCAAATATGT1690.10148931059332211No Hit
CTAGAAGGGGGAGACACCTCCTCCCTGGGTTGTGGTACTGAAAACTAAAGGG1680.10088878212827289No Hit
CAATAAGGGCAAGTCCTTGTGTGGACCTACGTCTTCATTTGAGAGATTTTTT1680.10088878212827289No Hit
CAACCTGGGAACGAGACCACTGATAACAACGAGAGTGCTGATGACCACGAAA1680.10088878212827289No Hit
CGACTTGGGCAACTCCTTCCAGTTGTCTTGAACAGCCTGACTCCTGCCTGCC1670.10028825366322364No Hit
TTCTAGGGTGTAGGTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGC1670.10028825366322364No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)