FastQCFastQC Report
Sat 31 Dec 2022
SRR5845838.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845838.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences165377
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGCCGTCT11090.6705890178198903No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGC10840.6554720426661507No Hit
GAGCCTGGGGTTATAGATAGTTGTGGTTTTAGAAGCTATTCTATTTGTTATT2740.16568204768498643No Hit
TGGCCTGGGCAGGTAAGCCTTATAGCAATCTTGCTCCCACATAAAAACTGCA2500.15116975153739637No Hit
CAATCGGGCGATCTATAGCGGGATCACACTAGAAAATATTTGCTTAACACTA2130.1287966283098617No Hit
GTAGTGAGGGTTTCCGTGCGGTGCGGCGAGTGAGGCCCCGGTCTTCCTCCTC2110.12758727029756253No Hit
GTTTTAGGGCTGACTCCCAGAGGCTGCCACCGGGGAGAAGCAGCGGTCCTCC1960.11851708520531874No Hit
GTCGAGGGGATGAAATAAAAATCAGAAAAAATTTAACATTAGCTATTTCTAA1940.11730772719301959No Hit
TAGCAGGGATAAACTTGGTTTTAAATCACCAACTAGTAAAGATGACAAAAGG1930.11670304818687No Hit
AGCATGGGGCCGCAGCCGGTCGTAACCAAGTTGTGTCCTGTCAGCCGCTGTC1930.11670304818687No Hit
TATAATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1900.11488901116842125No Hit
GTCTGGGGGGGCGCTGGGGATGGTGGGAGCCTGCGCAGCTGGCTGGGCGGTC1880.11367965315612207No Hit
GCCAAGGGGTCTGCCCTCATGCCAGCAGGAGTCATGCCAGAGATCATATCTG1850.11186561613767332No Hit
TCACACGGGATCCCACTCCGCTCTGGAACTTGTCGGATTTTTACCTTTCGTT1830.11065625812537415No Hit
CGTAGAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1830.11065625812537415No Hit
TGGTCAGGGGACGCTCTTCCGATCTGTCTCAGGGGAGGCATTGAGGCAGCCA1800.10884222110692537No Hit
CCAGGGGGGCCGTCGGCTCCGCGGCGCCGCCATGGCCGACGTGGAAGACGGA1800.10884222110692537No Hit
CAAAGCGGGTATGTAAGACAACCATTGCAGAGACACAAAGTAATCAGATTCT1770.10702818408847663No Hit
GTAGCAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1760.10642350508232705No Hit
GAAAACGGGCTGTGGCCAATGAAACACTTGAATATTTAAACCTAACCCCACT1760.10642350508232705No Hit
GAAAATGGGGCTTGATTAATAAATGCAAACAAAAATATATGCTGGCAATTCT1740.10521414707002788No Hit
GGCATGGGGGACTAGCATTTGGCAGAGAGCAAAGCAGAAGATGACATCTGGC1730.1046094680638783No Hit
GCCACCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1730.1046094680638783No Hit
GCGACTGGGAGATACATTACATTTGTGATAGTCTTCCTCAAAATTCATAACC1730.1046094680638783No Hit
TGCCAGGGAAGCAAAAGTTATGCTTACAAAGAAGTGTAAAAAATCAGGACCA1720.10400478905772871No Hit
TTCAACGGGGTAAGATAGTCGATATAAATCCCAATATATTAGTAATTTCATT1720.10400478905772871No Hit
CATGATGGGGGTGAGGAAGTGGTAAAATTGCCCTCTGTTAATCAATGCACCG1710.1034001100515791No Hit
CTGGCGGCGGGTGGAGGATAATGAAAAGTCCGTGTTTTGAAGTTTTCAGATT1710.1034001100515791No Hit
CGAACTGGGACCATGAACAGCTTTCTGTAGCAGAGATCACCAATGCTTGCTT1710.1034001100515791No Hit
AAACCAGGGGTTCAGACTTAGGCTCATTTTGATCATTTTAAGGTCCCAGTTG1700.10279543104542953No Hit
GGTGCATGGGCTTCCCTCCACCCTCACTCCAACCACCCCAATGGGGGTAATT1700.10279543104542953No Hit
TAAAGTGGGTCTATCCGCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCT1690.10219075203927995No Hit
GCAACCGGGATTTTCCCAGCTGTAAATTAGGAACTTGGCATTGAACACTATG1680.10158607303313036No Hit
ATACGTGGGCAAGGAGCAGATGCTGTGGGATTAGAAGAAAAAATCAAGCAGC1680.10158607303313036No Hit
GGAATAGGGCAGGTGACAAGATGTTGTGAGGGGTTTTGAGTCATCCAGTCCT1670.10098139402698078No Hit
GTCATGGGGAACTTGACTCTTTGATTGTATTTCTCCTATAGTAATGCTTCTC1670.10098139402698078No Hit
GTTTGAGGGCTCTGCACCCAGTGGACTGAATAGACATCTACAGAACTCCACA1660.1003767150208312No Hit
TTGTATGGGGAAATGTTCAGGTTGTTTGTAAATGGAAAGACATTATTTGAAT1660.1003767150208312No Hit
TTCCTGGGAATGCTGGTCTAGCTGGCGTGGTATGTTTATAGGCGAATTTCAG1660.1003767150208312No Hit
CAACCTGGGAACGAGACCACTGATAACAACGAGAGTGCTGATGACCACGAAA1660.1003767150208312No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)