FastQCFastQC Report
Sat 31 Dec 2022
SRR5845837.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845837.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166838
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGCCGTCT10810.6479339239262039No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGC8690.5208645512413239No Hit
TGCTCCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1960.11747923135017202No Hit
TGAACAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1880.11268416068281806No Hit
CAATGCGGGATTCAAATTAACTTTGACTCCTGGAAGTATTGAGTCTTCCTTT1840.11028662534914109No Hit
GAATGTGGGACCCTATTTGGATCTGTTGTTAGCTTGTTATCAGAGTCATTAC1730.10369340318152939No Hit
AAGCCTGGGTGACAGAGTGAGACTCCATCTCAAACAAAAACAAAAACCATTA1700.10189525168127166No Hit
AACGGCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1690.1012958678478524No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)