FastQCFastQC Report
Sat 31 Dec 2022
SRR5845835.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845835.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences162101
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGCCGTCT10750.6631667910747003No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGC8860.54657281571366No Hit
CAATGCGGGATTCAAATTAACTTTGACTCCTGGAAGTATTGAGTCTTCCTTT1870.11536017667997114No Hit
ACGCACGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1800.1110418812962289No Hit
AACGGCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1700.10487288789088284No Hit
CTGCCTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1700.10487288789088284No Hit
TGCTGCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1640.10117149184767521No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)