FastQCFastQC Report
Sat 31 Dec 2022
SRR5845830.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845830.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences179547
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGCCGTCT11230.6254629706984801No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGC10500.5848050928169226No Hit
TTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACG2680.14926453797612882No Hit
ACTGCCGGGCACACTCTGGGTTATTTGTACTGACTCTGACCACAGACTATCT2250.1253153770321977No Hit
TATCCAGGGATGTACTTCTTGTTGAAATCCTTGTCTTCCTTATGCTGCCCAT1830.10192317331952079No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)