FastQCFastQC Report
Sat 31 Dec 2022
SRR5845829.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845829.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences180466
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGCCGTCT10800.5984506776899804No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGC9310.5158866490086775No Hit
TTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACG2660.14739618543105074No Hit
ACTGCCGGGCACACTCTGGGTTATTTGTACTGACTCTGACCACAGACTATCT2220.12301486152516262No Hit
GCGTATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1880.10417474759788549No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)