FastQCFastQC Report
Sat 31 Dec 2022
SRR5845828.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845828.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144027
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGCCGTCT13600.9442673943080117No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGC11210.778326286043589No Hit
GTAATGGGGAAATTATCATCAGAGTGAACAGAAAACCTACAAAATGGGAGAA3680.25550764787157965No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTACCCTC1730.12011636707006325No Hit
TTTCCAGGGCATGAAATTTTAGATGATTGACTTGGTTTTCATTTGTAGAAAC1670.11595048150693968No Hit
GTTGACGGGTAAGGTACACCTCAGCAGTTCCAGAATTCTGCTGCGAGTGGTC1610.1117845959438161No Hit
GTGACTGGGGAGGACTTCCCCAAGCTGTGGATGATGAAGGGGCAGATCGAGG1550.1076187103806925No Hit
TCTATCGCTGGGATGGATATGTAGTAAAATTATGAAAATATGTATGAGGATA1510.10484145333861013No Hit
AAAGTAGGGAACCACTTACATGGCATTTAATTAAGTTAATTTTTGAAATTTG1470.10206419629652773No Hit
ATTGCGGGGAGGTAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGG1470.10206419629652773No Hit
GTCGCAGGGAGGAACTAAGGATGTCATGTAGATCGTGGGGACAGAGATGGGT1460.10136988203600715No Hit
TACCTAGGGGATCTAAGTACGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCT1450.10067556777548654No Hit
CTGAACGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1450.10067556777548654No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)