FastQCFastQC Report
Sat 31 Dec 2022
SRR5845826.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845826.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences141507
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGCCGTCT13460.9511896937960667No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACCCTCATCTCGTATGC10490.7413060837979746No Hit
GTAATGGGGAAATTATCATCAGAGTGAACAGAAAACCTACAAAATGGGAGAA3120.22048379232122792No Hit
TCTATCGCTGGGATGGATATGTAGTAAAATTATGAAAATATGTATGAGGATA1700.12013539966220753No Hit
TTTCCAGGGCATGAAATTTTAGATGATTGACTTGGTTTTCATTTGTAGAAAC1650.11660200555449554No Hit
TACCTAGGGGATCTAAGTACGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCT1560.11024189616061396No Hit
TGTTTAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1540.10882853851752916No Hit
AAAGTAGGGGGCACCAAGATGGCCGCCCCCGTGGATCTAGAGCTGAAGAAGG1500.10600182323135957No Hit
AGTTTAGGGTACATACCTCTGTAACCACCATTACTGTCAGGATATAGAACAG1470.10388178676673239No Hit
ACATGCGGGAACCTGGTGGGCATCCGGCTGAACTGGGATGACCGCACCGTCA1430.1010550714805628No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)