FastQCFastQC Report
Sat 31 Dec 2022
SRR5845810.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845810.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97791
Sequences flagged as poor quality0
Sequence length52
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACAATCCCATCTCGTATGCCGTCT6700.6851346238406397No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAATCCCATCTCGTATGC5030.5143622623758832No Hit
ACAATTGGGGTTATAAGTGATTGTACAATAGATACAATTGGAGGGAAAAGAG1560.1595238825658803No Hit
GTAATAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1230.12577844586925177No Hit
GCATACGGAATCTTTCTGTGGCTTCCTCTCTTTGAAATGGGTATAATAATGA1060.10839443302553406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)