FastQCFastQC Report
Sat 31 Dec 2022
SRR5845809.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845809.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99301
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACAATCCCATCTCGTATGCCGTCT6530.6575966002356471No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAATCCCATCTCGTATGC5360.5397730133634103No Hit
ACAATTGGGGTTATAAGTGATTGTACAATAGATACAATTGGAGGGAAAAGAG2020.20342191921531505No Hit
TCCACATGGGTATATGGGTCATGGACCCAGATGGGGCTTTCCCTTTGTAGCC1010.10171095960765753No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)