FastQCFastQC Report
Sat 31 Dec 2022
SRR5845798.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845798.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107282
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAATCCCATCTCGTATGC5560.5182602859752801No Hit
CTTATACACATCTCCGAGCCCACGAGACACAATCCCATCTCGTATGCCGTCT3800.3542066702708749No Hit
TGTGCTGGGCGTGGTACTACCCGTCCTATCCTCCCTCCTACCCTGGCACGTG1650.1538002647228799No Hit
CTAGGTGGGGGCTGAATGGATTTAAAAAACAAGACGCAGTGGTTTGTTGCCT1640.1528681419063776No Hit
CTGTCAGGGCACTGGAAACAAGTAAAAATAAATGTTAGACTTCATCTTTGTC1590.14820752782386606No Hit
AGGAAAGGGGGGTGGCTCACTACTGAACACATGTGTATGATACTAAAGACGG1580.14727540500736377No Hit
GCTATTGGGACAGACACGTAAATGCTGAGAGATTTTGTCAACACTAGGCCTG1560.14541115937435917No Hit
CTAGACGGGCTTCCTATCAGCTTCAGTGACCCAGGGTCTGAACTGCCTCCAT1470.13702205402583845No Hit
TGGCATGGGGGCTTCGTGACCATGACCAACTATGACGAGGCGGCCATGGCCA1460.13608993120933613No Hit
GATCACGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1460.13608993120933613No Hit
AGAGCAGGGAAGGAGGAAGACCAAAGAGGAGGAAAACCAGGAATGTGGTGTT1420.13236143994332694No Hit
TCAGCTGGGAGGATATGGCCGAATATTTCTTCCCTTGAGGTTTCTAACCCAA1410.13142931712682462No Hit
GCATTTGGGGCCTGCCTTATAAGAAGAGCTCCTGAAGGAAGCACTAAGCATG1370.12770082586081544No Hit
AAGCAAGGGACGGACGCTCGTCTTCGCCCGCCATGGCCGAGAGCGACTGGGA1360.12676870304431312No Hit
GTGAACGGGCTAATTTGTTAGTATCAAATGTATCGCAAATTCACAGGTTTCA1360.12676870304431312No Hit
GCTCTAGGGGGCGGCTCCGCTATAAAACCCAGGCCGGCAGGATCGCTGCACC1360.12676870304431312No Hit
AAAAATGGGAAGATGAAAACATTGCTTTCTTTCTTTTGTATTAGTGCTAATA1340.12490445741130851No Hit
GTAGCAGGGCTCTGGGCTTATACTGAGGCTCATCTACCCTAAAGGCCATCTC1310.1221080889618016No Hit
TACAATGGGGTTCTGTTTTGTGTCTGGTTTCTTTGGATCATCATATTTTTGA1310.1221080889618016No Hit
GTACTAGGGATAATTTGTTCAGCAATCCAGCAAGACCAACTTTTTAAAAAAA1300.12117596614529931No Hit
GCTAGCGGGACTCTATTTTACAGACAAGGAAACTGAGTGACAATCAAAGGGT1300.12117596614529931No Hit
TAGGATAGGGGGGCTTGTGCCTTGGTTTCTCCTTTGATTGCTGGTAAATTCT1290.120243843328797No Hit
GTAAGTGGGCAGGACCCTGTGATGATTGCATTAACTGCACAAATTGTTTGTA1290.120243843328797No Hit
CCGCTGAGGGTCCATAAGTTCACTGGTTCTGCTAGTGTCTTCTGAACATTCT1290.120243843328797No Hit
GCACTTGGGACTATTTGGGATTCTAGAAAAGGCAAAGCTATAAAGACAATAA1280.11931172051229472No Hit
TTAGCGGGGATGTCAACAACTTTGTTGTTGGGAGTGAAGAAGGTTCTGTGTA1280.11931172051229472No Hit
TCAACGGGTCATGGATATGAGGGTGGTTTATGATTAAGGGTTTATATAAATA1270.1183795976957924No Hit
TGCAAAGGGGGAGTGGGCGGTGGCGATTGGTGTTGGCGGTCTGGCTCAGCTG1260.1174474748792901No Hit
GGACCAGGGATGAGACTGGAGAGATACCACGAAAGAATCTGGATGTCATGAA1250.11651535206278779No Hit
ACTCTGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1250.11651535206278779No Hit
GAAGCTGGGAAGTTAACTGTGAAAAAAATGTAAAGGTTTTATTTAGGACATT1240.11558322924628547No Hit
GCGAACAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1240.11558322924628547No Hit
CACGGAGGGGTTTTTAAAAAAATGTAGACTTGCATTTTTACTGTGCTTATTT1240.11558322924628547No Hit
AAGCTAGGGAGTGCTGGGATTACCAGCGTGAGCCACTGGGCCCGGCCCCAAA1230.11465110642978318No Hit
ATTCATGGGACCTGGTGGCCTCTGCCCCGTCTCATGAGGGGCCCGAGCAGAA1220.11371898361328088No Hit
GATTATGGGCGAGATGCGCGAGGACATCGCGTCGCTGACGCGCGAGCACGGG1220.11371898361328088No Hit
AATCCAGGGATTTGTTGAATTATTAGTTACCACTGTCATTTCTTCAGCTATG1220.11371898361328088No Hit
TTCAAAGGGCTAGCTGAGGGAGTCGCGGACTCGGGCGAACCCACCCTCGCGA1200.11185473798027627No Hit
AGCCTGGGCAATGAGAGCAAAACTCAGTCTCAAACAAACAAACAAAAATAAG1190.11092261516377397No Hit
AACGGCAGGTACAGGCGGGATGTCACAATGATTTAGTTAAAGGAAGTATTCA1190.11092261516377397No Hit
AAATAAGGGTGGATTTTCATATTTCCCTGATGATTAGTTATATTGAACACTT1190.11092261516377397No Hit
TAAACGGGAAGAGGGATAACCTGCACCCCTCCCTGCAAGGGGTTCAGAGCCC1180.10999049234727168No Hit
ATATTTGGGTCTATTTTCTAGGTGGACACTCGGGAAATTTTTCTTGACCTTG1170.10905836953076938No Hit
AGTAAAGGGATGTATTGTAAAGGAAGAAATAAAACTGTTTCTATTTTTAGAT1170.10905836953076938No Hit
CTCCAAGGGGAAAATCCCAGCTATTTCACCTAGATGGAATAGCCACCCTGAG1170.10905836953076938No Hit
GGTTACGGGATATGAAAATGTGTATTTATAAGCTTTTAATCAGATAAATCTT1170.10905836953076938No Hit
TTTACAGGGGAGCCGTGGGGCCTCCCGCACCCGTGGACACGCGAGCCTCATG1160.10812624671426706No Hit
GTCACTGGGGGCAGCTGAAAAGTAAATTGCCTTCTAGACACTGAAGGCAAAT1160.10812624671426706No Hit
GAGGTGGGAGGATCACCTGGGCCCAGGGAGGTCGAGGCTGCAGTGAGCCGGG1160.10812624671426706No Hit
TTGAAGGGGGAAAAAAAGAACCATTTGGATACATAGGTATGGTCTGAGCTAT1150.10719412389776477No Hit
ATGCATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1150.10719412389776477No Hit
ACGTTTGGGGGGGCTTTACAGTCTGGAGCTCAAGGGACCCCTTAAGTTGGGC1150.10719412389776477No Hit
GCGTTTGGGATTTTGGTATTTTTTCTAATTCATATTTTTGAACAAAAGTATA1150.10719412389776477No Hit
CTTCCGGGGTCTTTGCATCCTTCAATGACACTTTTGTCCATGTCACTGATCT1150.10719412389776477No Hit
CGTTACGGGACCGCCTGCAGAGGGAGAAAGAATTCAAGGCCAAGGAAGCTGC1150.10719412389776477No Hit
GTCACAGGGAAGGAAGAATCTGTGAAGCTATTCCGAGGGGTGAAGAAGATGG1150.10719412389776477No Hit
CAAATGGGGTGGCTACCTGGCCAACATGGGGGGGCTCGCGGCTGGAGCTGAT1140.10626200108126246No Hit
ACGTTCGGGAGATGTACCTAGTGTGTATTTCTTATCTCTAGACAAGTTCATG1140.10626200108126246No Hit
AGCATCGGGCCTCCAAAATGCTTTATAGACCTCAAGAAATTCTAACAACACT1140.10626200108126246No Hit
CGGGCTGGTCTTGGGCTCCAGATGTCAGGTGATCCGCCCGAGGCGTCCCAGG1140.10626200108126246No Hit
GAATATGGGGCAGCCATGAGAAGGAAGGATTCACCACCTCCAGGAAAAGTGT1140.10626200108126246No Hit
TTAGCGGGGGAAGCAGGAAGAAATGCTCATAAAGAGGATCAGACCTTCTTTC1130.10532987826476017No Hit
CTCTCTGGGCTATAGGCAGTTGTCCAGATAATCCCTTGTGTTGTATGGGAAA1130.10532987826476017No Hit
GGCTGTGAGAATCCCTTCCCTTCCCCACATCCCAGCCACAAACATCATCTTC1130.10532987826476017No Hit
ACATTAGGGGTGGACTGATTCCGTGTAAATAAAAATAAATTAACAGGTAGTA1130.10532987826476017No Hit
TGATGCGGGAACCCCTAAGACTGCCTTCAGTAGGAACAAGCTGGCTTCTGTG1130.10532987826476017No Hit
ACGGATGGGCATGACCTTGGATTTGGCAGTGGTTTCTCAGATATGACACCAA1110.10346563263175555No Hit
TGTTATGGGCAGGACAAACCCCAAACAGTTAAATGTTTACTTTAAAAGATAT1110.10346563263175555No Hit
TGTCGAGGGGAAACATTCTCACTACAGATTTAGTGGGGAATTTGGTCATTTA1110.10346563263175555No Hit
CTCCGTGGGCATCCAGGTGTTTCTGTTGAAACTGCTAGTCATAAATTATGTG1110.10346563263175555No Hit
GTATTTGGGGGGTGTTCAAAATATATCTTAATTCAAAAGGGCTGCTTGAAAA1110.10346563263175555No Hit
CTGCTGACGGGCATTTGTATGAGCTTCCTCATCTATAAAATGAGCATAACAT1100.10253350981525326No Hit
GCAATAGGGACCAGATGGAATAACTCGCATGGAAGCTGAAAAGCTTTTTGGG1100.10253350981525326No Hit
CTTGTATGGGGATGGCATCGCAACACCTAAAGGATCCTCATTAGGAACCCCA1100.10253350981525326No Hit
ACACCAGGGCAAGTGAAGCATAGAGAAAGTGTGGACAGCCCCCAGCTGACAG1100.10253350981525326No Hit
ATCTGTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1090.10160138699875096No Hit
GTCACGGGAAGTGTATGAAGAGGTGGTTTTTTAAAACTTCAAGTTGGAATTT1090.10160138699875096No Hit
GCTCCTGGGAGGATGTGTAGAATCAAAAACACAGACAAGTGTTGACAAGGAG1090.10160138699875096No Hit
TACTGCGGGCAGGCTCAGCCAGCAGTCACACTGCCCAGATTTCTTTCTTTTC1090.10160138699875096No Hit
TCAGCCGGGATTCTGAATGTATTGGGGACCCCTCCTTAGGCCTCGTTAAGTC1090.10160138699875096No Hit
GGCCATGGGAGAGCTGCCATCCTAACCCTCACTAACTGTATCTGAGCTGTTT1090.10160138699875096No Hit
TATGCGTGGGATAATTTCTAGGCTTATCTTGTTTTGCAGTTTTCATGTTTTG1090.10160138699875096No Hit
TGTCAAGGGCAGGAGTGAGCCACCACGCCCAGCTAATTTTGTATTTTTTGTA1090.10160138699875096No Hit
TATCTTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1090.10160138699875096No Hit
ACCTTTGGGATACCTGATGATTAATTGTGAGTGTTTGCAGAGCCAAGCACTG1080.10066926418224864No Hit
CAGACTGGGAACATTCAATAAGAGTAATTTCTTAGTGTGACCATTGCTTTTC1080.10066926418224864No Hit
GTAATGGGGAAATGCTAAACTTGAATAAGATGGAATGGCTGAACATGTGGTT1080.10066926418224864No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)