FastQCFastQC Report
Sat 31 Dec 2022
SRR5845797.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845797.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108039
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAATCCCATCTCGTATGC6270.5803459861716602No Hit
CTTATACACATCTCCGAGCCCACGAGACACAATCCCATCTCGTATGCCGTCT3830.35450161515748946No Hit
GCTATTGGGACAGACACGTAAATGCTGAGAGATTTTGTCAACACTAGGCCTG1850.1712344616295967No Hit
GCATTTGGGGCCTGCCTTATAAGAAGAGCTCCTGAAGGAAGCACTAAGCATG1710.15827617804681643No Hit
GATCACGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1600.14809466951748906No Hit
GTGAACGGGCTAATTTGTTAGTATCAAATGTATCGCAAATTCACAGGTTTCA1520.1406899360416146No Hit
CTAGGTGGGGGCTGAATGGATTTAAAAAACAAGACGCAGTGGTTTGTTGCCT1490.13791316098816167No Hit
AGAGCAGGGAAGGAGGAAGACCAAAGAGGAGGAAAACCAGGAATGTGGTGTT1390.1286572441433186No Hit
AATCCAGGGATTTGTTGAATTATTAGTTACCACTGTCATTTCTTCAGCTATG1390.1286572441433186No Hit
AGGAAAGGGGGGTGGCTCACTACTGAACACATGTGTATGATACTAAAGACGG1380.1277316524588343No Hit
GTAGCAGGGCTCTGGGCTTATACTGAGGCTCATCTACCCTAAAGGCCATCTC1370.12680606077435No Hit
AAAAATGGGAAGATGAAAACATTGCTTTCTTTCTTTTGTATTAGTGCTAATA1370.12680606077435No Hit
TACAATGGGGTTCTGTTTTGTGTCTGGTTTCTTTGGATCATCATATTTTTGA1350.1249548774053814No Hit
TCAGACGGGGTTCACCTGTGATATTTTCCTGATGATATCCACAGTTTTAATA1350.1249548774053814No Hit
CTGTCAGGGCACTGGAAACAAGTAAAAATAAATGTTAGACTTCATCTTTGTC1340.12402928572089707No Hit
CTCCGTGGGCATCCAGGTGTTTCTGTTGAAACTGCTAGTCATAAATTATGTG1330.12310369403641278No Hit
AACGGCAGGTACAGGCGGGATGTCACAATGATTTAGTTAAAGGAAGTATTCA1320.12217810235192847No Hit
TGTGCTGGGCGTGGTACTACCCGTCCTATCCTCCCTCCTACCCTGGCACGTG1300.12032691898295986No Hit
CCGCTGAGGGTCCATAAGTTCACTGGTTCTGCTAGTGTCTTCTGAACATTCT1280.11847573561399125No Hit
ATTCATGGGACCTGGTGGCCTCTGCCCCGTCTCATGAGGGGCCCGAGCAGAA1280.11847573561399125No Hit
TGCAAAGGGGGAGTGGGCGGTGGCGATTGGTGTTGGCGGTCTGGCTCAGCTG1280.11847573561399125No Hit
GCTCTAGGGGGCGGCTCCGCTATAAAACCCAGGCCGGCAGGATCGCTGCACC1280.11847573561399125No Hit
TTGAAGGGGGAAAAAAAGAACCATTTGGATACATAGGTATGGTCTGAGCTAT1270.11755014392950693No Hit
TGTCAAGGGCAGGAGTGAGCCACCACGCCCAGCTAATTTTGTATTTTTTGTA1270.11755014392950693No Hit
TCTTATGGGAGAGGTTGAAGAGCAGAGATTTCAGATCATCTGGTCCAACCTT1260.11662455224502263No Hit
GGCCATGGGAGAGCTGCCATCCTAACCCTCACTAACTGTATCTGAGCTGTTT1250.11569896056053833No Hit
ATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCC1250.11569896056053833No Hit
TAGAGCCGGGCGGTCTGATTGGTTGCAGAAAACAGCCAGCCAGAGGCTGAAG1250.11569896056053833No Hit
AGTAAAGGGATGTATTGTAAAGGAAGAAATAAAACTGTTTCTATTTTTAGAT1240.11477336887605401No Hit
GGAGTTGGGCAAAGGTCATCAAGCAGTGTTCATTTATCCTGTCACATGTTTC1240.11477336887605401No Hit
AACATAGGGTAAAATAAAAATAAAAATTAAAAGAAAATGTAGTGCATATGTA1230.11384777719156972No Hit
GCACTTGGGACTATTTGGGATTCTAGAAAAGGCAAAGCTATAAAGACAATAA1230.11384777719156972No Hit
TGTTTGGGGTTCTAGTATTACTGTCTTTCTGAACTAAGACTGTCTTGTGCTT1230.11384777719156972No Hit
ATCGTAGGGCTGTGGAGTTGCTATACATTTTCACATGGATAGCTATTCCCAA1230.11384777719156972No Hit
GCGAACAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1220.11292218550708541No Hit
AATGCAGGGGAAGTAGAATCTCATTGTGGTTTTTGATTTGCATTTCCCTGAT1220.11292218550708541No Hit
GTCACAGGGAAGGAAGAATCTGTGAAGCTATTCCGAGGGGTGAAGAAGATGG1220.11292218550708541No Hit
GGACCAGGGATGAGACTGGAGAGATACCACGAAAGAATCTGGATGTCATGAA1220.11292218550708541No Hit
AGCCTGGGCAATGAGAGCAAAACTCAGTCTCAAACAAACAAACAAAAATAAG1210.11199659382260109No Hit
AACGCTGGGGGTAGGGCCGAGCGCGGAACGCGAGGGGCTGCTGGGGTGTTTG1210.11199659382260109No Hit
GTCACGGGAAGTGTATGAAGAGGTGGTTTTTTAAAACTTCAAGTTGGAATTT1200.11107100213811678No Hit
GTAAGTGGGCAGGACCCTGTGATGATTGCATTAACTGCACAAATTGTTTGTA1200.11107100213811678No Hit
TGGCATGGGGGCTTCGTGACCATGACCAACTATGACGAGGCGGCCATGGCCA1200.11107100213811678No Hit
GCGCCTGGCCGAGATGATCTATTTTTTTAGCACTGAGCATAGACCTGGTCCA1190.11014541045363249No Hit
CTGCTGACGGGCATTTGTATGAGCTTCCTCATCTATAAAATGAGCATAACAT1190.11014541045363249No Hit
CGGCAAGGGTGAAGACAAATAAGTTTGAGCACTTGAGTAAAACTTCACAGGT1190.11014541045363249No Hit
GGCGTGGGGACTGGAGAGAAACCTTACAAATGTGATGAATGTGGCAAAGTCT1190.11014541045363249No Hit
GCAACTGGGGGACTGGCAGATTTCTCTGATGGAAACTCAAAAGGTCCCATGG1180.10921981876914819No Hit
GAATATGGGGCAGCCATGAGAAGGAAGGATTCACCACCTCCAGGAAAAGTGT1180.10921981876914819No Hit
TACCTCGGGGCAGGTGGAACACCCTGAAACCTGGAATCATTCTATGAGAATA1180.10921981876914819No Hit
ATGCATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1180.10921981876914819No Hit
GTACTAGGGATAATTTGTTCAGCAATCCAGCAAGACCAACTTTTTAAAAAAA1180.10921981876914819No Hit
AAGCAAGGGACGGACGCTCGTCTTCGCCCGCCATGGCCGAGAGCGACTGGGA1170.10829422708466387No Hit
GCAGCGGGGAGAACAGATGGGCAGGTCCACAGCACTGCCAGATTCTGCACAA1170.10829422708466387No Hit
TCGTCCGGGAGTAGCACGGTTTGCAATTGCAAAAATATGGAATCAATCCATC1170.10829422708466387No Hit
AGCATCGGGCCTCCAAAATGCTTTATAGACCTCAAGAAATTCTAACAACACT1160.10736863540017957No Hit
TTAGCGGGGATGTCAACAACTTTGTTGTTGGGAGTGAAGAAGGTTCTGTGTA1160.10736863540017957No Hit
AAGCGAGGGAACATGAAAAGATTTGCTACTGAACTTTGTCCTTTGAAACTGC1150.10644304371569527No Hit
CTAGTCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1150.10644304371569527No Hit
GTCACCGGGGGTGGAAGTGTAAATTAGTTCAACCATTGTGGATACAGTGTGG1150.10644304371569527No Hit
GATTATGGGCGAGATGCGCGAGGACATCGCGTCGCTGACGCGCGAGCACGGG1140.10551745203121095No Hit
CAAACCGGGATAAAGACGATGATTAAAACCAGCAATCATTAGCATAGAAGGA1140.10551745203121095No Hit
CTTCCGGGGTCTTTGCATCCTTCAATGACACTTTTGTCCATGTCACTGATCT1140.10551745203121095No Hit
GAGGTGGGAGGATCACCTGGGCCCAGGGAGGTCGAGGCTGCAGTGAGCCGGG1140.10551745203121095No Hit
TCAAGTGGGGAGTAAAGTGGCGGGAGCCGCAGCTATGGAGCCGCAGGAGGAG1140.10551745203121095No Hit
GACCCTGGGGGGTTCCCCCACTTATGTTGTTTGAGCAGTAAAGAAAATATAA1130.10459186034672664No Hit
CTATACGGGACTGGGAAGAAACGGCGGCCGGGAGGGGGCTCCGGGGACCATG1130.10459186034672664No Hit
TTGTTTTACAAATATGACCCTGCTGCAGTTGTTCCCTCTTCGTCTCCATGTG1130.10459186034672664No Hit
TCAGCTGGGAGGATATGGCCGAATATTTCTTCCCTTGAGGTTTCTAACCCAA1130.10459186034672664No Hit
TTAGCGGGGGAAGCAGGAAGAAATGCTCATAAAGAGGATCAGACCTTCTTTC1120.10366626866224235No Hit
TTCAAAGGGCTAGCTGAGGGAGTCGCGGACTCGGGCGAACCCACCCTCGCGA1120.10366626866224235No Hit
TCAACGGGTCATGGATATGAGGGTGGTTTATGATTAAGGGTTTATATAAATA1120.10366626866224235No Hit
TTTGCAGGGCAGAGAGCCAGCTCATGCAGGGCTTTGCAGATCAGTTAGGACT1120.10366626866224235No Hit
TATGGAGGGTGTTCAACGTATGAATGAATACATGTTAAAAATGCACAGTCCT1120.10366626866224235No Hit
TGATGTGGGGGAACGCAACATGAAGGTGCTCCTTGCCGCCGCCCTCATCGCG1110.10274067697775803No Hit
CTAGACGGGCTTCCTATCAGCTTCAGTGACCCAGGGTCTGAACTGCCTCCAT1110.10274067697775803No Hit
CTCCAAGGGGAAAATCCCAGCTATTTCACCTAGATGGAATAGCCACCCTGAG1110.10274067697775803No Hit
ATCTGTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1100.10181508529327372No Hit
TCAGGTGGGGAGGCCTCAGGAAACTTAAATCATGGTGGAAGACGAAGTGGGA1100.10181508529327372No Hit
CGTTACGGGACCGCCTGCAGAGGGAGAAAGAATTCAAGGCCAAGGAAGCTGC1100.10181508529327372No Hit
CTAGCTGGGCAAATCCTTTAGACAAAGAACAGTAAGAAATTATTAAACACTC1100.10181508529327372No Hit
GTATTTGGGGGGTGTTCAAAATATATCTTAATTCAAAAGGGCTGCTTGAAAA1100.10181508529327372No Hit
ACACCAGGGCAAGTGAAGCATAGAGAAAGTGTGGACAGCCCCCAGCTGACAG1100.10181508529327372No Hit
TAGGATAGGGGGGCTTGTGCCTTGGTTTCTCCTTTGATTGCTGGTAAATTCT1090.10088949360878942No Hit
GTCACTGGGGGCAGCTGAAAAGTAAATTGCCTTCTAGACACTGAAGGCAAAT1090.10088949360878942No Hit
CGGTGGGGCCGTTTTTTCAGTGAAGCTCTCAGAATGTCCAGTACAGATGTTG1090.10088949360878942No Hit
AAGCTAGGGAGTGCTGGGATTACCAGCGTGAGCCACTGGGCCCGGCCCCAAA1090.10088949360878942No Hit
ATCGAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1090.10088949360878942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)