FastQCFastQC Report
Sat 31 Dec 2022
SRR5845795.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845795.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95518
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACAATCCCATCTCGTATGCCGTCT3420.35804769781611845No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAATCCCATCTCGTATGC2370.24812077304801192No Hit
AGCGGTGGGAAGCTGCTGGAGAGGATGACGAAATGGGGCGAGGAGGCAAGAT1360.1423815406520237No Hit
CATGCAGGGAAGAGGAGGAAGAGGAAGATGAAGAAGAGTCAGAGTCCGAGGC1340.14028769446596454No Hit
GTAGTTGGGCCTAAATAAATGAGCTGTTGGAAGAAAAGAATCACAGTACTTT1330.13924077137293495No Hit
CTTATAGGGATGTAAATGTTTACTGGTATAAACTTCCCTCTTTGTATGGCTT1290.13505307900081662No Hit
GAAATGGGAGAGAAGCTCGTGGTGGGGGAAATCTGGAATTTGTCTAAATATT1260.13191230972172785No Hit
GTCCATGGGTCAGTGGGGAGATTGGAGATAAAGAAAAGCTGGGAGGTAAACT1220.1277246173496095No Hit
GTCCCAGGGACATCGGAGAGTTGGTAGATAACTGTCTGAAAAGATAGTTGTT1200.12563077116355031No Hit
TCTCATGGGCATCTATGTGGGAAAGCATTCACTGAATCTTCTGTGCTTAAAC1190.12458384807052074No Hit
GCTCTTGGGCAAGACTACTAATTAGAGAAAAGAGTTCCTCTATTCTCTGACC1180.12353692497749115No Hit
TCAAGTGGGTACCTGTGTATTACAGAGAGCAGTAGAAAAGTAGAAAGGTAGA1170.12249000188446156No Hit
TTGTGAGGGGCTCACGGCCTCGCCTCGGTATCGCAGCGGGTCCTCTCTATCT1150.1203961556984024No Hit
GCTTGCGGGTTGTTACTATAATCATAAATTGTTACATTCATCATTGCCTTTC1130.11830230951234322No Hit
TGCATAGGGGCTTCCGGTCTCCTCAGAAGTCGCTTAGCTCTTCGGTGGTTGT1130.11830230951234322No Hit
GCTACAGGGGGAAAAGTTCATCTGGTTGAGGAAAGATTGGATCTTGGTTTGT1120.11725538641931363No Hit
AATGATGGGGGAGGTTGTCCCCACCCAAGGCTTGGCAGTAGAGTGCATCTCT1110.11620846332628404No Hit
AGATAAGGGACAGTAGCTGCAGAATACAAGAAACTTTGTGGTGAAAATGATA1090.11411461714022487No Hit
GTATAGGGGGGGGATCGACTGTCTCAAGGCCACCTGAGATATGGCTTCTGTT1080.11306769404719529No Hit
TGCCTCGGGATGCCCCAATTAACAGACACAGACTGGCAAATTGGATAAAGGG1080.11306769404719529No Hit
TCTAAGGGGGGGTCCAAGGTGATTTTACAGAAGAAAAAAACAACTCAAGCAT1070.1120207709541657No Hit
CATCCTGGGGGAGTACAGTGGCTCAATCATAGCTCACTGTGCCCTCAGCCTT1060.11097384786113611No Hit
ATTATCGGGATCTTTGGCCCCCTGGGAAACTGTTTTGACACATGGTCTGCAA1050.10992692476810653No Hit
ACCTGAGGGCACTGTTTGCAACTTGGGATTAGTAAATATTTTAATTGTTTAA1040.10888000167507694No Hit
TACCATGGGGAGAAGACCATGCATGTGGGATGGTGGCAGTGGCACTCTGGCA1040.10888000167507694No Hit
GATTTGGGGTAGGGAATTCCAGATGCCCAGAGTCAATGTTACCAACATGGCA1030.10783307858204735No Hit
AGTCAAGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1030.10783307858204735No Hit
GGCACTGGGCAGTGGCCTTCTTTTCTAAAAGTCTATATAGAACATAAGCTTC1030.10783307858204735No Hit
ACTTTAGGGGACACACAGAAAGCTGGAAGCTGATGAGCACAGATGATCAACA1010.10573923239598818No Hit
GCACCCAAAATTATTCAAATTGATCAACAAATTCAATAAAGTTGCAGGATAC1010.10573923239598818No Hit
GAAAAGGGGATGTGAAAACCTCCTTAGCTGCGACCACATTCTTTCATTTTGT1010.10573923239598818No Hit
AGAAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1000.1046923093029586No Hit
TTTGTTGGGCATGATAGCCAAGATGTGAAATCGGGGCACGTAAGGTGACATT1000.1046923093029586No Hit
TGAAGGGGAACCTATAAAATCTCATTTTGCATAGCACTTTAACTATATAAGG990.10364538620992902No Hit
TTCCCTGGAGGAAATTCAGAAGAAATTAGAAGCTGCAGAAGAAAGACGCAAG990.10364538620992902No Hit
GCTGCTGGGTATGTTCTGATACCTCATTATGAACACTTAAGACCTATTTGGG990.10364538620992902No Hit
TAGTATGGGACATCAACTGGATATGCCATGGCTTATTTAATCACTGTATTTA990.10364538620992902No Hit
TGAACAGGGAAGAGAGCCCACATTGCCAAGACAATCCTAAGCAAGAAGAACA990.10364538620992902No Hit
CAGATAGGGGTGTTGTTTTTGTGAAGTGCAAAATAAAGATAGTGATAGTTTC990.10364538620992902No Hit
CAAGACGGGCACTAATTTTGCATGCGTATTTATAAGAAAAATGTGAATTTGG990.10364538620992902No Hit
TAAGACGGGATCTTGTAAGTTTGATGATTCATTAATCAAACTTAGAAGAACT990.10364538620992902No Hit
GGTAGCGGGGGGCGCCCGGGATCCAGCTCATCCCCTTGGCTGGGAACATCCT990.10364538620992902No Hit
GTCAGTGGGACCATAAGCAATCCCTTGCCTTAACTCATCACCCTTTTTCACT980.10259846311689944No Hit
AAAGCTGGGCGATCTCGTTGGGGATCCTGGAAAGTGAAACAGAAAATTATTA980.10259846311689944No Hit
GCGATGGGGTAAGACAGTTGGGATCCAAACCCAAGTCTTGAGCAATGTTTTT980.10259846311689944No Hit
CTGGTAATGGGAGTATTTTTAACGACATCTCTAATATTCATGCTGATGCATT980.10259846311689944No Hit
ATTGCAGGGGGATCTCTGCAGGGACTCACCTCATGTCTGTTTTTCACATTTG980.10259846311689944No Hit
ACGAACGGGCATTTGTCATTTTTGGAAGTTGGCATATATGATTTAGGGAAAT980.10259846311689944No Hit
CAACATGGGGAAGATATGACACTTACAAGGTGGACAGGCATGATTATTGGGC980.10259846311689944No Hit
GTGTGTGGGGCAGACTTGCTTGCACATATTTGAAATTCTCGCTTCTAGTTTG980.10259846311689944No Hit
CATTGCGGGATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTA970.10155154002386986No Hit
AAAGCAGGGATCTTTTAACCAACTGAACAATACACCAAAAGCAGCCTAGGGA970.10155154002386986No Hit
GGGTACGGGACTGTTGATTTTGGTAGATGAACAAAAGTGACAAGTGACATCT960.10050461693084027No Hit
TAATAGGGGAGAGAAGTTGTTGCGCTGTAATACCTCTGTTGCTACTGTGAGA960.10050461693084027No Hit
TGCTTGGGAATTATAACAAATATATTATACTAATGTAAGATGTTAATCTGTG960.10050461693084027No Hit
TTGACAGGGACTATGAATTGGTTTGGAAGTAACTTCTTCAGGTGTCCTGAGG960.10050461693084027No Hit
ATACCAGGGATCATTTGCAAGGAGATCTAGGACAAAAACAAAAAATGTGCTT960.10050461693084027No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)