FastQCFastQC Report
Sat 31 Dec 2022
SRR5845794.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845794.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95933
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACAATCCCATCTCGTATGCCGTCT3520.3669227481679922No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAATCCCATCTCGTATGC2380.2480898126817675No Hit
TCTCATGGGCATCTATGTGGGAAAGCATTCACTGAATCTTCTGTGCTTAAAC1440.15010476061417866No Hit
GAAATGGGAGAGAAGCTCGTGGTGGGGGAAATCTGGAATTTGTCTAAATATT1380.14385039558858786No Hit
GTAGTTGGGCCTAAATAAATGAGCTGTTGGAAGAAAAGAATCACAGTACTTT1350.1407232130757925No Hit
GTCCCAGGGACATCGGAGAGTTGGTAGATAACTGTCTGAAAAGATAGTTGTT1290.1344688480502017No Hit
AGCGGTGGGAAGCTGCTGGAGAGGATGACGAAATGGGGCGAGGAGGCAAGAT1280.1334264538792699No Hit
TTCCCTGGAGGAAATTCAGAAGAAATTAGAAGCTGCAGAAGAAAGACGCAAG1270.1323840597083381No Hit
AATGATGGGGGAGGTTGTCCCCACCCAAGGCTTGGCAGTAGAGTGCATCTCT1230.12821448302461094No Hit
CATAGGGGGATCCAGGATTCCTTACCATATTACGGGCAACTGGATTTGATGG1210.12612969468274732No Hit
CTACACGGGATGAACATGATATCATGGAATTTCAGATCCTGTATATTTTTGG1160.12091772382808837No Hit
TTTTGTGGGAAACAGACAATATGTGAGTGCCTTTTGCAGAAGAGGGTGTGTT1140.11883293548622476No Hit
TACCATGGGGAGAAGACCATGCATGTGGGATGGTGGCAGTGGCACTCTGGCA1140.11883293548622476No Hit
AAAGCTGGGCGATCTCGTTGGGGATCCTGGAAAGTGAAACAGAAAATTATTA1130.11779054131529296No Hit
GCTTGCGGGTTGTTACTATAATCATAAATTGTTACATTCATCATTGCCTTTC1130.11779054131529296No Hit
CATCCTGGGGGAGTACAGTGGCTCAATCATAGCTCACTGTGCCCTCAGCCTT1120.11674814714436117No Hit
GAAAAGGGGATGTGAAAACCTCCTTAGCTGCGACCACATTCTTTCATTTTGT1120.11674814714436117No Hit
GATTTGGGGTAGGGAATTCCAGATGCCCAGAGTCAATGTTACCAACATGGCA1110.11570575297342937No Hit
CTTAACGTCGGGAAGCCGTATCCGAACAACTGAAAAAACAACTATTGAAAAC1110.11570575297342937No Hit
CGACAAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1100.11466335880249758No Hit
GTGTGTGGGGCAGACTTGCTTGCACATATTTGAAATTCTCGCTTCTAGTTTG1100.11466335880249758No Hit
GTATAGGGGGGGGATCGACTGTCTCAAGGCCACCTGAGATATGGCTTCTGTT1090.11362096463156579No Hit
TAAACAGGGTACTACATGAACATCATGGATAACAAGGGATTCTGATTCATTA1090.11362096463156579No Hit
ACAAGAGGGGTATGAATTCAGATTTAATCAGACGATCACCAGAGCTTGAAAA1090.11362096463156579No Hit
GCTCTTGGGCAAGACTACTAATTAGAGAAAAGAGTTCCTCTATTCTCTGACC1080.11257857046063399No Hit
GCTGCTGGGTATGTTCTGATACCTCATTATGAACACTTAAGACCTATTTGGG1070.11153617628970218No Hit
GTCAGCGGGACACTTGCAGAAATTAATGCAAACCGAGCTGATGCAGAGGAGG1060.11049378211877038No Hit
AAAGCAGGGATCTTTTAACCAACTGAACAATACACCAAAAGCAGCCTAGGGA1050.1094513879478386No Hit
TGCCTCGGGATGCCCCAATTAACAGACACAGACTGGCAAATTGGATAAAGGG1050.1094513879478386No Hit
CTATGGGGGTCTCTAAAAGGGCGGCTCACTGCAAGCTCCGCCTCCCGGTTCA1040.1084089937769068No Hit
CCTTCTGGGTAATGTAGTCTTGAGACCAAACTGATTGGGAACTACTCATATT1040.1084089937769068No Hit
ACCTGAGGGCACTGTTTGCAACTTGGGATTAGTAAATATTTTAATTGTTTAA1030.107366599605975No Hit
TATAATGGGTGATTTCTAAGTTCCTTTACATGTCTGGAAACTTTGGTCACTT1030.107366599605975No Hit
GCTACAGGGGGAAAAGTTCATCTGGTTGAGGAAAGATTGGATCTTGGTTTGT1030.107366599605975No Hit
AGATAAGGGACAGTAGCTGCAGAATACAAGAAACTTTGTGGTGAAAATGATA1030.107366599605975No Hit
TTGATGGGGCTAGCCAGGGCACCCTAGTAGGCTCCCTTCCCCTACTCATCGC1030.107366599605975No Hit
CTTTGTGGGCATTGTCCCAGAGGCAGCCTCCCCAGTACACATCACTGCCCAC1020.1063242054350432No Hit
ATCTAAGGGGGCTCAGGGCTCCGGGAGCGAGATGAAGAGGAAGAGGCAGCCC1020.1063242054350432No Hit
GCATTTGGGGTGGGTTTGCTCAGTATTAGTAGACAAGGTCTTTGTTCAGACG1020.1063242054350432No Hit
CTTATAGGGATGTAAATGTTTACTGGTATAAACTTCCCTCTTTGTATGGCTT1020.1063242054350432No Hit
ACGTAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1010.10528181126411142No Hit
TTGTGAGGGGCTCACGGCCTCGCCTCGGTATCGCAGCGGGTCCTCTCTATCT1010.10528181126411142No Hit
GTGCTAGGGTACGCTAGACTACAGTACACTACGCTAGACTACAGTATACTAC1000.10423941709317962No Hit
TCTAAGGGGGGGTCCAAGGTGATTTTACAGAAGAAAAAAACAACTCAAGCAT1000.10423941709317962No Hit
CATGCAGGGAAGAGGAGGAAGAGGAAGATGAAGAAGAGTCAGAGTCCGAGGC990.10319702292224782No Hit
CTTGTAGGGAAAGAAAGAAGGAAGGAAGGAAGGGAGAGAGAAAAAGAAAGAG990.10319702292224782No Hit
GTATGGGGAATCTAGAAAAGGACAGAAAAAAAATCAGAAAAACAAGCCAGGT990.10319702292224782No Hit
TGTGAAGGGGACCAACTTATAAAAGAGATTTTTAATAATTCTTAATGATTTC990.10319702292224782No Hit
AGATTGGGGTATGAATAGCAACAAAAGGAATCTATAGAATATTTACTAATTG980.10215462875131603No Hit
AACCAAGGGTGGTTCCACATCTTGGCTGTTGTGAATAATGCTGCACTAAACA980.10215462875131603No Hit
CATACCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC980.10215462875131603No Hit
AAAACCGGGGGGGGGCAAGATGGCGGCGGCAGTAGGGGTTCGTGGCCGGTAC980.10215462875131603No Hit
TGCTAAGGGATAGCCATAGTGCTTAAATTCTTTTTGGATTTTCCTTGGATAG980.10215462875131603No Hit
TAACTGGGGACCCCATCTTGAAACCAAAGCTTATTAGACCAAATTAAATCAT980.10215462875131603No Hit
GGGTACGGGACTGTTGATTTTGGTAGATGAACAAAAGTGACAAGTGACATCT980.10215462875131603No Hit
CAAGGAGGGATGTGAAGAATGTGGCAAAGCTTTTAGCCAATCCTCAACCCTT980.10215462875131603No Hit
CTTATAGTAGCAACATGTAGGAGTTTCATTTAAAGTGAGGATAATTTTGACC980.10215462875131603No Hit
TATGTTGGGCTTGAACCTTTCTACGTGTTAGATGTGTCCGAAGGCTTCTCTG970.10111223458038424No Hit
TGTGCCGGGAAGAACAAAGATGACCAGATTACACTGGATGAATTCAAAGAAG970.10111223458038424No Hit
GTGCAGGGGTTGCAGTGAACAGAAATCATGCCATTGCACTCCAGCATGAGCA970.10111223458038424No Hit
TGCATAGGGGCTTCCGGTCTCCTCAGAAGTCGCTTAGCTCTTCGGTGGTTGT970.10111223458038424No Hit
ACGAACGGGCATTTGTCATTTTTGGAAGTTGGCATATATGATTTAGGGAAAT960.10006984040945242No Hit
CATGCTGGGAGTACCTGCCACATGACAAACTGTATGTTCTTTAAGAACCGTA960.10006984040945242No Hit
GCACTAGGGGGTCCAAGAGGAGCAGATCGAAGTGGAGGAAACCATTGAGGCT960.10006984040945242No Hit
TTTACTGGGAAATATTCTGAATCCTGGTAATTAAAAGTTTGGGTGTATTTTC960.10006984040945242No Hit
ATTATCGGGATCTTTGGCCCCCTGGGAAACTGTTTTGACACATGGTCTGCAA960.10006984040945242No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)